miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24316 3' -53.9 NC_005263.2 + 40731 1.07 0.001624
Target:  5'- cAAAGAACACCAACCCGAUCGCCGCGAu -3'
miRNA:   3'- -UUUCUUGUGGUUGGGCUAGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 28642 0.78 0.171939
Target:  5'- --cGAGCGCCGugCgGAaCGCCGCGAg -3'
miRNA:   3'- uuuCUUGUGGUugGgCUaGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 36205 0.77 0.202911
Target:  5'- -cAGGACGCCAgcgcgcaggcGCCCGG-CGCCGCGu -3'
miRNA:   3'- uuUCUUGUGGU----------UGGGCUaGCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 25223 0.76 0.214266
Target:  5'- --cGAACGCCGugCCGAUCccgGCCGaCGAa -3'
miRNA:   3'- uuuCUUGUGGUugGGCUAG---CGGC-GCU- -5'
24316 3' -53.9 NC_005263.2 + 44340 0.76 0.226161
Target:  5'- gGGAGAACACCGugCCGcugccCGCgCGCGAg -3'
miRNA:   3'- -UUUCUUGUGGUugGGCua---GCG-GCGCU- -5'
24316 3' -53.9 NC_005263.2 + 33922 0.74 0.294201
Target:  5'- -cGGAACGCUuguGCCCGAUCGCauagaacgGCGAc -3'
miRNA:   3'- uuUCUUGUGGu--UGGGCUAGCGg-------CGCU- -5'
24316 3' -53.9 NC_005263.2 + 22045 0.74 0.294201
Target:  5'- ---uGACGCgCAACCCGGcugUUGCCGCGAc -3'
miRNA:   3'- uuucUUGUG-GUUGGGCU---AGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 15636 0.72 0.377177
Target:  5'- --uGAauGCGCCGACgCCGAUCuaCGCGAu -3'
miRNA:   3'- uuuCU--UGUGGUUG-GGCUAGcgGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 43629 0.72 0.395556
Target:  5'- gGAAGcACGCCGACCCGcgCGCaCGgaCGAa -3'
miRNA:   3'- -UUUCuUGUGGUUGGGCuaGCG-GC--GCU- -5'
24316 3' -53.9 NC_005263.2 + 46917 0.72 0.408761
Target:  5'- gGAAGAACGCgCuGCCgCGcagcacgaggcacaaGUCGCCGCGAc -3'
miRNA:   3'- -UUUCUUGUG-GuUGG-GC---------------UAGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 35593 0.71 0.414504
Target:  5'- --cGAACGCCAACCCGcgCGaaGCc- -3'
miRNA:   3'- uuuCUUGUGGUUGGGCuaGCggCGcu -5'
24316 3' -53.9 NC_005263.2 + 44601 0.71 0.433013
Target:  5'- aGAAGAuuGCCGcgcgcgacaacuuGCCCGAcUCGCUGCGGc -3'
miRNA:   3'- -UUUCUugUGGU-------------UGGGCU-AGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 12569 0.71 0.434
Target:  5'- ---uAGCGCCcGCCCGcgCGCCGCc- -3'
miRNA:   3'- uuucUUGUGGuUGGGCuaGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 15823 0.71 0.437963
Target:  5'- cAAGAccgGCuCCGACCUGGcgcgcuucgcguggcUCGCCGCGAu -3'
miRNA:   3'- uUUCU---UGuGGUUGGGCU---------------AGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 17822 0.71 0.443946
Target:  5'- cGAGGAugccGCGCgCGGCCCGAuugcgcagcgcuUCGCCGaCGAc -3'
miRNA:   3'- -UUUCU----UGUG-GUUGGGCU------------AGCGGC-GCU- -5'
24316 3' -53.9 NC_005263.2 + 8789 0.71 0.443946
Target:  5'- --uGAGCAgCCAACCugCGAUCGCgCGCGc -3'
miRNA:   3'- uuuCUUGU-GGUUGG--GCUAGCG-GCGCu -5'
24316 3' -53.9 NC_005263.2 + 38199 0.71 0.443946
Target:  5'- gGAAGAAgGcCCGACgCCGcgCGCCGaCGAc -3'
miRNA:   3'- -UUUCUUgU-GGUUG-GGCuaGCGGC-GCU- -5'
24316 3' -53.9 NC_005263.2 + 23369 0.71 0.454018
Target:  5'- ---cGACACCGACCCGGugaUCGUCGUa- -3'
miRNA:   3'- uuucUUGUGGUUGGGCU---AGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 33948 0.7 0.474525
Target:  5'- --cGGcCGCCGGCCCGAagUCGCCaagGCGGc -3'
miRNA:   3'- uuuCUuGUGGUUGGGCU--AGCGG---CGCU- -5'
24316 3' -53.9 NC_005263.2 + 39401 0.7 0.474525
Target:  5'- --uGGACgcgGCCGACCUG-UCGCCGCa- -3'
miRNA:   3'- uuuCUUG---UGGUUGGGCuAGCGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.