miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24316 3' -53.9 NC_005263.2 + 40731 1.07 0.001624
Target:  5'- cAAAGAACACCAACCCGAUCGCCGCGAu -3'
miRNA:   3'- -UUUCUUGUGGUUGGGCUAGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 26035 0.68 0.616609
Target:  5'- --cGGuCACCAcgacACCCGGgaUCGUCGCGGc -3'
miRNA:   3'- uuuCUuGUGGU----UGGGCU--AGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 47177 0.67 0.650447
Target:  5'- --cGggUGCCAACCCGuucgaugCGUCGaCGAg -3'
miRNA:   3'- uuuCuuGUGGUUGGGCua-----GCGGC-GCU- -5'
24316 3' -53.9 NC_005263.2 + 19988 0.66 0.760307
Target:  5'- cAAGAcgGCGCCAcugccgucaacgACgCGAUCGgCCGCGc -3'
miRNA:   3'- uUUCU--UGUGGU------------UGgGCUAGC-GGCGCu -5'
24316 3' -53.9 NC_005263.2 + 46917 0.72 0.408761
Target:  5'- gGAAGAACGCgCuGCCgCGcagcacgaggcacaaGUCGCCGCGAc -3'
miRNA:   3'- -UUUCUUGUG-GuUGG-GC---------------UAGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 44601 0.71 0.433013
Target:  5'- aGAAGAuuGCCGcgcgcgacaacuuGCCCGAcUCGCUGCGGc -3'
miRNA:   3'- -UUUCUugUGGU-------------UGGGCU-AGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 23369 0.71 0.454018
Target:  5'- ---cGACACCGACCCGGugaUCGUCGUa- -3'
miRNA:   3'- uuucUUGUGGUUGGGCU---AGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 30558 0.7 0.492315
Target:  5'- uGAGGGCACCAGaCCgGAuucgcgcacaccguUUGCCGUGAu -3'
miRNA:   3'- uUUCUUGUGGUU-GGgCU--------------AGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 6968 0.69 0.527681
Target:  5'- --cGAACGCCGGuuUCCGGaucUCGCgGCGAa -3'
miRNA:   3'- uuuCUUGUGGUU--GGGCU---AGCGgCGCU- -5'
24316 3' -53.9 NC_005263.2 + 3203 0.68 0.616609
Target:  5'- -cGGugaGCCGGCCCGGcgCGCCGCc- -3'
miRNA:   3'- uuUCuugUGGUUGGGCUa-GCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 45325 0.69 0.582897
Target:  5'- ------gACCAGCCCGGUCGCgagguCGUGAu -3'
miRNA:   3'- uuucuugUGGUUGGGCUAGCG-----GCGCU- -5'
24316 3' -53.9 NC_005263.2 + 33290 0.7 0.516857
Target:  5'- --uGAACuCCGACCCGGcaacagUGCCGCGc -3'
miRNA:   3'- uuuCUUGuGGUUGGGCUa-----GCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 44340 0.76 0.226161
Target:  5'- gGGAGAACACCGugCCGcugccCGCgCGCGAg -3'
miRNA:   3'- -UUUCUUGUGGUugGGCua---GCG-GCGCU- -5'
24316 3' -53.9 NC_005263.2 + 37233 0.68 0.594104
Target:  5'- --cGAcgcGCGCCgGugCCGAguucCGCCGCGAc -3'
miRNA:   3'- uuuCU---UGUGG-UugGGCUa---GCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 33922 0.74 0.294201
Target:  5'- -cGGAACGCUuguGCCCGAUCGCauagaacgGCGAc -3'
miRNA:   3'- uuUCUUGUGGu--UGGGCUAGCGg-------CGCU- -5'
24316 3' -53.9 NC_005263.2 + 39855 0.7 0.495486
Target:  5'- --cGAACGCgCAuACCCGGcUGCCGUGAu -3'
miRNA:   3'- uuuCUUGUG-GU-UGGGCUaGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 18631 0.68 0.605344
Target:  5'- -cAGGugG-CAACCCGggCGCCGCu- -3'
miRNA:   3'- uuUCUugUgGUUGGGCuaGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 7986 0.68 0.638043
Target:  5'- -cAGAGCugCAcgagucgGCCCGAU-GCCGUGu -3'
miRNA:   3'- uuUCUUGugGU-------UGGGCUAgCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 43629 0.72 0.395556
Target:  5'- gGAAGcACGCCGACCCGcgCGCaCGgaCGAa -3'
miRNA:   3'- -UUUCuUGUGGUUGGGCuaGCG-GC--GCU- -5'
24316 3' -53.9 NC_005263.2 + 12569 0.71 0.434
Target:  5'- ---uAGCGCCcGCCCGcgCGCCGCc- -3'
miRNA:   3'- uuucUUGUGGuUGGGCuaGCGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.