miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24316 3' -53.9 NC_005263.2 + 1154 0.67 0.695261
Target:  5'- ----uGCACCGcguAUCCGAUCGCCuCGGc -3'
miRNA:   3'- uuucuUGUGGU---UGGGCUAGCGGcGCU- -5'
24316 3' -53.9 NC_005263.2 + 2389 0.7 0.506124
Target:  5'- --cGAGCGgCAGgCCGGggcaccacgcuUCGCCGCGAc -3'
miRNA:   3'- uuuCUUGUgGUUgGGCU-----------AGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 3203 0.68 0.616609
Target:  5'- -cGGugaGCCGGCCCGGcgCGCCGCc- -3'
miRNA:   3'- uuUCuugUGGUUGGGCUa-GCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 4858 0.66 0.706334
Target:  5'- --cGcGCGCCGugCCGAU-GCCGCu- -3'
miRNA:   3'- uuuCuUGUGGUugGGCUAgCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 5842 0.67 0.672935
Target:  5'- --uGAACGCgCAACCCGccugcAUUGCUGCa- -3'
miRNA:   3'- uuuCUUGUG-GUUGGGC-----UAGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 6224 0.69 0.527681
Target:  5'- -cGGAAaGCgGauGCCCGAUCGCuCGCGGc -3'
miRNA:   3'- uuUCUUgUGgU--UGGGCUAGCG-GCGCU- -5'
24316 3' -53.9 NC_005263.2 + 6361 0.66 0.749739
Target:  5'- --uGAucGCGCCGugccGCCCGAagUUGCCGCc- -3'
miRNA:   3'- uuuCU--UGUGGU----UGGGCU--AGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 6968 0.69 0.527681
Target:  5'- --cGAACGCCGGuuUCCGGaucUCGCgGCGAa -3'
miRNA:   3'- uuuCUUGUGGUU--GGGCU---AGCGgCGCU- -5'
24316 3' -53.9 NC_005263.2 + 7986 0.68 0.638043
Target:  5'- -cAGAGCugCAcgagucgGCCCGAU-GCCGUGu -3'
miRNA:   3'- uuUCUUGugGU-------UGGGCUAgCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 8132 0.66 0.760307
Target:  5'- --cGAGCGCUuGCUCGAUCGCuuCGCc- -3'
miRNA:   3'- uuuCUUGUGGuUGGGCUAGCG--GCGcu -5'
24316 3' -53.9 NC_005263.2 + 8789 0.71 0.443946
Target:  5'- --uGAGCAgCCAACCugCGAUCGCgCGCGc -3'
miRNA:   3'- uuuCUUGU-GGUUGG--GCUAGCG-GCGCu -5'
24316 3' -53.9 NC_005263.2 + 9754 0.68 0.639171
Target:  5'- cGAGGcGCAUUucgCCGGUCGCCGCGu -3'
miRNA:   3'- -UUUCuUGUGGuugGGCUAGCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 12569 0.71 0.434
Target:  5'- ---uAGCGCCcGCCCGcgCGCCGCc- -3'
miRNA:   3'- uuucUUGUGGuUGGGCuaGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 15209 0.66 0.71733
Target:  5'- -cGGGcCGCCGACgCCGAcgccacgaaacUCGCCGCc- -3'
miRNA:   3'- uuUCUuGUGGUUG-GGCU-----------AGCGGCGcu -5'
24316 3' -53.9 NC_005263.2 + 15386 0.69 0.582897
Target:  5'- --cGggUAgCGACCCGGcCGCCGUGc -3'
miRNA:   3'- uuuCuuGUgGUUGGGCUaGCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 15568 0.68 0.616609
Target:  5'- ---cGugGCCGGCCUGccgacaGUCGCCGCGu -3'
miRNA:   3'- uuucUugUGGUUGGGC------UAGCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 15636 0.72 0.377177
Target:  5'- --uGAauGCGCCGACgCCGAUCuaCGCGAu -3'
miRNA:   3'- uuuCU--UGUGGUUG-GGCUAGcgGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 15823 0.71 0.437963
Target:  5'- cAAGAccgGCuCCGACCUGGcgcgcuucgcguggcUCGCCGCGAu -3'
miRNA:   3'- uUUCU---UGuGGUUGGGCU---------------AGCGGCGCU- -5'
24316 3' -53.9 NC_005263.2 + 16475 0.66 0.728238
Target:  5'- --cGAACACCGAgaCGGcgcugCGCCGCGc -3'
miRNA:   3'- uuuCUUGUGGUUggGCUa----GCGGCGCu -5'
24316 3' -53.9 NC_005263.2 + 17176 0.66 0.749739
Target:  5'- --cGAAUGCgCAGCUCGcggcguacgccGUCGCCGCGc -3'
miRNA:   3'- uuuCUUGUG-GUUGGGC-----------UAGCGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.