miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24316 5' -57.2 NC_005263.2 + 40765 1.14 0.000238
Target:  5'- cGGCGGCGGCAAGUCGCUCCUGAACGCg -3'
miRNA:   3'- -CCGCCGCCGUUCAGCGAGGACUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 27667 0.79 0.085975
Target:  5'- cGGCGGCGGCAAGcacggcCGCcuUCUUGuGCGCg -3'
miRNA:   3'- -CCGCCGCCGUUCa-----GCG--AGGACuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 39367 0.76 0.150159
Target:  5'- cGGCGGCGGCg---CGCUUCUacGACGCa -3'
miRNA:   3'- -CCGCCGCCGuucaGCGAGGAc-UUGCG- -5'
24316 5' -57.2 NC_005263.2 + 18619 0.73 0.248645
Target:  5'- cGGCGuucGCGGCAGGUgGCaaCCcGGGCGCc -3'
miRNA:   3'- -CCGC---CGCCGUUCAgCGa-GGaCUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 32724 0.72 0.275224
Target:  5'- -aCGGCGGcCGGGUCGCUaCCcGAcagcguGCGCa -3'
miRNA:   3'- ccGCCGCC-GUUCAGCGA-GGaCU------UGCG- -5'
24316 5' -57.2 NC_005263.2 + 39713 0.72 0.275224
Target:  5'- aGGCGGCGcGCuuccuGGUCGg-CCUGccuGCGCc -3'
miRNA:   3'- -CCGCCGC-CGu----UCAGCgaGGACu--UGCG- -5'
24316 5' -57.2 NC_005263.2 + 38691 0.72 0.275224
Target:  5'- gGGCGGCacgGGCAAGUCGUacUUCgucGAGCaGCu -3'
miRNA:   3'- -CCGCCG---CCGUUCAGCG--AGGa--CUUG-CG- -5'
24316 5' -57.2 NC_005263.2 + 47413 0.72 0.282214
Target:  5'- gGGCGGCGGCAcGaucgCGCUCaCcGAGCa- -3'
miRNA:   3'- -CCGCCGCCGUuCa---GCGAG-GaCUUGcg -5'
24316 5' -57.2 NC_005263.2 + 12485 0.71 0.296616
Target:  5'- cGGCGGCGcGCA--UUGCggcaUCCUGcGCGCc -3'
miRNA:   3'- -CCGCCGC-CGUucAGCG----AGGACuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 27919 0.71 0.296616
Target:  5'- -aCGGCGGCGcGUCGC-CCgGcGCGCu -3'
miRNA:   3'- ccGCCGCCGUuCAGCGaGGaCuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 17588 0.71 0.311581
Target:  5'- cGGCGGCGGcCAAGgcgCGCagggcaucuUCCaGuGGCGCg -3'
miRNA:   3'- -CCGCCGCC-GUUCa--GCG---------AGGaC-UUGCG- -5'
24316 5' -57.2 NC_005263.2 + 44070 0.71 0.319277
Target:  5'- uGCGGCGGCAGcGggGCUaucacgaucugCCUGAGCuGCa -3'
miRNA:   3'- cCGCCGCCGUU-CagCGA-----------GGACUUG-CG- -5'
24316 5' -57.2 NC_005263.2 + 18701 0.71 0.324748
Target:  5'- cGGC-GCGGCAGG-CGCgggcggcaacccuuUCCUGuaAGCGCg -3'
miRNA:   3'- -CCGcCGCCGUUCaGCG--------------AGGAC--UUGCG- -5'
24316 5' -57.2 NC_005263.2 + 38091 0.71 0.327114
Target:  5'- cGGCGGCGGUgcugCGCccgcaCCUGGcGCGCa -3'
miRNA:   3'- -CCGCCGCCGuucaGCGa----GGACU-UGCG- -5'
24316 5' -57.2 NC_005263.2 + 27776 0.71 0.327114
Target:  5'- uGCGGCGGCAGGccaUGCUUC---GCGCg -3'
miRNA:   3'- cCGCCGCCGUUCa--GCGAGGacuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 27382 0.7 0.343213
Target:  5'- cGGCGGCGGCcGG-CGCg-CUGAccggcuGCGUc -3'
miRNA:   3'- -CCGCCGCCGuUCaGCGagGACU------UGCG- -5'
24316 5' -57.2 NC_005263.2 + 27203 0.7 0.343213
Target:  5'- uGGCGGCGuugaucgucguuGCAccGcCGCUCgUGAGCGUg -3'
miRNA:   3'- -CCGCCGC------------CGUu-CaGCGAGgACUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 17048 0.7 0.363274
Target:  5'- uGGUGGCGGCGugaacggcuucaugaAGgUGCUCgaGcAGCGCa -3'
miRNA:   3'- -CCGCCGCCGU---------------UCaGCGAGgaC-UUGCG- -5'
24316 5' -57.2 NC_005263.2 + 21199 0.69 0.385907
Target:  5'- cGCGGCgcgGGCGAGUgggugCGUUUC-GAGCGCg -3'
miRNA:   3'- cCGCCG---CCGUUCA-----GCGAGGaCUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 47647 0.69 0.394857
Target:  5'- gGGCGGCGGCAcaaacgccgugaAGauugCGUUCCgcacugccGCGCa -3'
miRNA:   3'- -CCGCCGCCGU------------UCa---GCGAGGacu-----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.