Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24316 | 5' | -57.2 | NC_005263.2 | + | 901 | 0.67 | 0.53169 |
Target: 5'- cGGCGGUcgccgccGGCGGGUUaCUCgUcGACGCa -3' miRNA: 3'- -CCGCCG-------CCGUUCAGcGAGgAcUUGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 1372 | 0.66 | 0.596028 |
Target: 5'- cGGCGGCGGCcuugaacGAG-CGCa--UGAagccGCGCu -3' miRNA: 3'- -CCGCCGCCG-------UUCaGCGaggACU----UGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 1487 | 0.66 | 0.607992 |
Target: 5'- aGGCGcucGCGGCAcucGGUUuCUUUcGAGCGCa -3' miRNA: 3'- -CCGC---CGCCGU---UCAGcGAGGaCUUGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 1512 | 0.67 | 0.50147 |
Target: 5'- aGCGaCGGCGAGUCag-CCUGcAGCGUg -3' miRNA: 3'- cCGCcGCCGUUCAGcgaGGAC-UUGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 1639 | 0.69 | 0.394857 |
Target: 5'- cGuCGGCGGCGua--GC-CCUGGAUGCg -3' miRNA: 3'- cC-GCCGCCGUucagCGaGGACUUGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 3427 | 0.66 | 0.55291 |
Target: 5'- uGCuGCGGCGccGUCGCgaCCUGGuugaccuGCGCg -3' miRNA: 3'- cCGcCGCCGUu-CAGCGa-GGACU-------UGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 4577 | 0.66 | 0.575455 |
Target: 5'- uGCGGuCGGCAA-UCGUcuuuUCCaUGAACGg -3' miRNA: 3'- cCGCC-GCCGUUcAGCG----AGG-ACUUGCg -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 6327 | 0.68 | 0.481075 |
Target: 5'- -cCGGCGcGCGAGUCGC-CC---GCGCc -3' miRNA: 3'- ccGCCGC-CGUUCAGCGaGGacuUGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 6632 | 0.67 | 0.51181 |
Target: 5'- cGCGGuCGaGCAgucgcgcgucGGUCGCUUCacgugcgGGGCGCa -3' miRNA: 3'- cCGCC-GC-CGU----------UCAGCGAGGa------CUUGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 8853 | 0.68 | 0.491224 |
Target: 5'- aGGCGGCGcGCGGGgCGCgagCCccgcuAUGCg -3' miRNA: 3'- -CCGCCGC-CGUUCaGCGa--GGacu--UGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 10155 | 0.66 | 0.564689 |
Target: 5'- aGGCGGgCaGCuuggcGUCGC-CgaGAGCGCg -3' miRNA: 3'- -CCGCC-GcCGuu---CAGCGaGgaCUUGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 10400 | 0.66 | 0.575455 |
Target: 5'- cGGcCGGCGaGCGGGUCcggcgcgcGUUCaacGAACGCc -3' miRNA: 3'- -CC-GCCGC-CGUUCAG--------CGAGga-CUUGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 10871 | 0.66 | 0.586266 |
Target: 5'- cGGCGGaacuCGGCAccGGcgCGCgUCgUGAGCGg -3' miRNA: 3'- -CCGCC----GCCGU--UCa-GCG-AGgACUUGCg -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 12485 | 0.71 | 0.296616 |
Target: 5'- cGGCGGCGcGCA--UUGCggcaUCCUGcGCGCc -3' miRNA: 3'- -CCGCCGC-CGUucAGCG----AGGACuUGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 13964 | 0.66 | 0.579774 |
Target: 5'- cGCGGCGcGCGuucgcggggcguguAGUUGCUCacguccacuucgaaCUGAcGCGCg -3' miRNA: 3'- cCGCCGC-CGU--------------UCAGCGAG--------------GACU-UGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 15263 | 0.66 | 0.575455 |
Target: 5'- uGCuGCGGCuuGUCGCggCgCUGAaggGCGCc -3' miRNA: 3'- cCGcCGCCGuuCAGCGa-G-GACU---UGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 17048 | 0.7 | 0.363274 |
Target: 5'- uGGUGGCGGCGugaacggcuucaugaAGgUGCUCgaGcAGCGCa -3' miRNA: 3'- -CCGCCGCCGU---------------UCaGCGAGgaC-UUGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 17588 | 0.71 | 0.311581 |
Target: 5'- cGGCGGCGGcCAAGgcgCGCagggcaucuUCCaGuGGCGCg -3' miRNA: 3'- -CCGCCGCC-GUUCa--GCG---------AGGaC-UUGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 17756 | 0.66 | 0.607992 |
Target: 5'- cGGCGGCaGCGcGgccgCGCUCg-GcACGCg -3' miRNA: 3'- -CCGCCGcCGUuCa---GCGAGgaCuUGCG- -5' |
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24316 | 5' | -57.2 | NC_005263.2 | + | 18165 | 0.66 | 0.558256 |
Target: 5'- cGGCGGCGGCGuugGcggcaucgucuacguGUCGaaCCguagUGAAUGCg -3' miRNA: 3'- -CCGCCGCCGU---U---------------CAGCgaGG----ACUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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