miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24316 5' -57.2 NC_005263.2 + 40765 1.14 0.000238
Target:  5'- cGGCGGCGGCAAGUCGCUCCUGAACGCg -3'
miRNA:   3'- -CCGCCGCCGUUCAGCGAGGACUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 6632 0.67 0.51181
Target:  5'- cGCGGuCGaGCAgucgcgcgucGGUCGCUUCacgugcgGGGCGCa -3'
miRNA:   3'- cCGCC-GC-CGU----------UCAGCGAGGa------CUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 26092 0.67 0.543327
Target:  5'- aGauGCGGcCGAG-CGCgUCCUGGuACGCg -3'
miRNA:   3'- cCgcCGCC-GUUCaGCG-AGGACU-UGCG- -5'
24316 5' -57.2 NC_005263.2 + 33700 0.66 0.607992
Target:  5'- cGCGGCGGCAAuaCGCgCCaGAcaccuuuCGCa -3'
miRNA:   3'- cCGCCGCCGUUcaGCGaGGaCUu------GCG- -5'
24316 5' -57.2 NC_005263.2 + 38691 0.72 0.275224
Target:  5'- gGGCGGCacgGGCAAGUCGUacUUCgucGAGCaGCu -3'
miRNA:   3'- -CCGCCG---CCGUUCAGCG--AGGa--CUUG-CG- -5'
24316 5' -57.2 NC_005263.2 + 39713 0.72 0.275224
Target:  5'- aGGCGGCGcGCuuccuGGUCGg-CCUGccuGCGCc -3'
miRNA:   3'- -CCGCCGC-CGu----UCAGCgaGGACu--UGCG- -5'
24316 5' -57.2 NC_005263.2 + 44070 0.71 0.319277
Target:  5'- uGCGGCGGCAGcGggGCUaucacgaucugCCUGAGCuGCa -3'
miRNA:   3'- cCGCCGCCGUU-CagCGA-----------GGACUUG-CG- -5'
24316 5' -57.2 NC_005263.2 + 18701 0.71 0.324748
Target:  5'- cGGC-GCGGCAGG-CGCgggcggcaacccuuUCCUGuaAGCGCg -3'
miRNA:   3'- -CCGcCGCCGUUCaGCG--------------AGGAC--UUGCG- -5'
24316 5' -57.2 NC_005263.2 + 21199 0.69 0.385907
Target:  5'- cGCGGCgcgGGCGAGUgggugCGUUUC-GAGCGCg -3'
miRNA:   3'- cCGCCG---CCGUUCA-----GCGAGGaCUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 1512 0.67 0.50147
Target:  5'- aGCGaCGGCGAGUCag-CCUGcAGCGUg -3'
miRNA:   3'- cCGCcGCCGUUCAGcgaGGAC-UUGCG- -5'
24316 5' -57.2 NC_005263.2 + 25709 0.68 0.461091
Target:  5'- cGGCGGCGcGUAcGuUCGCggCCUGcccGAUGCc -3'
miRNA:   3'- -CCGCCGC-CGUuC-AGCGa-GGAC---UUGCG- -5'
24316 5' -57.2 NC_005263.2 + 27203 0.7 0.343213
Target:  5'- uGGCGGCGuugaucgucguuGCAccGcCGCUCgUGAGCGUg -3'
miRNA:   3'- -CCGCCGC------------CGUu-CaGCGAGgACUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 39367 0.76 0.150159
Target:  5'- cGGCGGCGGCg---CGCUUCUacGACGCa -3'
miRNA:   3'- -CCGCCGCCGuucaGCGAGGAc-UUGCG- -5'
24316 5' -57.2 NC_005263.2 + 45168 0.68 0.481075
Target:  5'- cGGCGGCGGCGAuggCGCaUUCgcGAGCa- -3'
miRNA:   3'- -CCGCCGCCGUUca-GCG-AGGa-CUUGcg -5'
24316 5' -57.2 NC_005263.2 + 18619 0.73 0.248645
Target:  5'- cGGCGuucGCGGCAGGUgGCaaCCcGGGCGCc -3'
miRNA:   3'- -CCGC---CGCCGUUCAgCGa-GGaCUUGCG- -5'
24316 5' -57.2 NC_005263.2 + 27776 0.71 0.327114
Target:  5'- uGCGGCGGCAGGccaUGCUUC---GCGCg -3'
miRNA:   3'- cCGCCGCCGUUCa--GCGAGGacuUGCG- -5'
24316 5' -57.2 NC_005263.2 + 8853 0.68 0.491224
Target:  5'- aGGCGGCGcGCGGGgCGCgagCCccgcuAUGCg -3'
miRNA:   3'- -CCGCCGC-CGUUCaGCGa--GGacu--UGCG- -5'
24316 5' -57.2 NC_005263.2 + 22506 0.67 0.532745
Target:  5'- cGGCGGCGGUucGgcggcUGCggCCUGcucGAUGCc -3'
miRNA:   3'- -CCGCCGCCGuuCa----GCGa-GGAC---UUGCG- -5'
24316 5' -57.2 NC_005263.2 + 32724 0.72 0.275224
Target:  5'- -aCGGCGGcCGGGUCGCUaCCcGAcagcguGCGCa -3'
miRNA:   3'- ccGCCGCC-GUUCAGCGA-GGaCU------UGCG- -5'
24316 5' -57.2 NC_005263.2 + 12485 0.71 0.296616
Target:  5'- cGGCGGCGcGCA--UUGCggcaUCCUGcGCGCc -3'
miRNA:   3'- -CCGCCGC-CGUucAGCG----AGGACuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.