miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24318 3' -58.5 NC_005263.2 + 30364 0.66 0.504273
Target:  5'- -aGGuCGUCGUGCaGCGCuuCGGGGa- -3'
miRNA:   3'- uaUC-GCAGCACGaCGCGcuGCUCCgc -5'
24318 3' -58.5 NC_005263.2 + 38419 0.66 0.493972
Target:  5'- --cGCGUCGggUGCgccgGCGUGACGccGGCc -3'
miRNA:   3'- uauCGCAGC--ACGa---CGCGCUGCu-CCGc -5'
24318 3' -58.5 NC_005263.2 + 36789 0.66 0.473666
Target:  5'- -cGGCaG-CGUGUUGCcUGGCGAGGCc -3'
miRNA:   3'- uaUCG-CaGCACGACGcGCUGCUCCGc -5'
24318 3' -58.5 NC_005263.2 + 19057 0.66 0.463672
Target:  5'- --cGCGUCGUGCUauccaaggccGCGCGucaguacgGCGucGCGg -3'
miRNA:   3'- uauCGCAGCACGA----------CGCGC--------UGCucCGC- -5'
24318 3' -58.5 NC_005263.2 + 26198 0.66 0.463672
Target:  5'- --cGCG-CGgcgGCcGCGCGAUGcGGCGg -3'
miRNA:   3'- uauCGCaGCa--CGaCGCGCUGCuCCGC- -5'
24318 3' -58.5 NC_005263.2 + 24804 0.67 0.453789
Target:  5'- -gGGCGUCG-GCgGCGCGuauucggccuauACGGccGGCGg -3'
miRNA:   3'- uaUCGCAGCaCGaCGCGC------------UGCU--CCGC- -5'
24318 3' -58.5 NC_005263.2 + 23948 0.67 0.453789
Target:  5'- --cGCGUCGUGa-GCGUGACGGuGCc -3'
miRNA:   3'- uauCGCAGCACgaCGCGCUGCUcCGc -5'
24318 3' -58.5 NC_005263.2 + 30516 0.67 0.453789
Target:  5'- --cGCGUCGUgaccccGCUGCGCGAgcagcuCGAuGCGc -3'
miRNA:   3'- uauCGCAGCA------CGACGCGCU------GCUcCGC- -5'
24318 3' -58.5 NC_005263.2 + 19855 0.67 0.453789
Target:  5'- -cAGCG-CGUGCaggUGCGCGACucgcAGGUa -3'
miRNA:   3'- uaUCGCaGCACG---ACGCGCUGc---UCCGc -5'
24318 3' -58.5 NC_005263.2 + 4357 0.67 0.453789
Target:  5'- uUAGUGUUGUGUcaaUGCGCGgucagcgcauGCGGucGGCGa -3'
miRNA:   3'- uAUCGCAGCACG---ACGCGC----------UGCU--CCGC- -5'
24318 3' -58.5 NC_005263.2 + 29235 0.67 0.434372
Target:  5'- -cGGCG-CGcaGCgGCGCGcCGAGGCa -3'
miRNA:   3'- uaUCGCaGCa-CGaCGCGCuGCUCCGc -5'
24318 3' -58.5 NC_005263.2 + 29182 0.67 0.434372
Target:  5'- -gAGCGcUCGUGCcGCGCggucacgcucGACGcAGGCc -3'
miRNA:   3'- uaUCGC-AGCACGaCGCG----------CUGC-UCCGc -5'
24318 3' -58.5 NC_005263.2 + 28438 0.67 0.424846
Target:  5'- ---aCGUCGcggGCaGCGCGGCGuAGGCa -3'
miRNA:   3'- uaucGCAGCa--CGaCGCGCUGC-UCCGc -5'
24318 3' -58.5 NC_005263.2 + 33967 0.67 0.424846
Target:  5'- -cGGCGagUGUGCgGCgaaucguaGCGGCGAGGCc -3'
miRNA:   3'- uaUCGCa-GCACGaCG--------CGCUGCUCCGc -5'
24318 3' -58.5 NC_005263.2 + 37465 0.67 0.415447
Target:  5'- -cGGCGUCcauGUGUacugcgGCGUGACGAacGGCGc -3'
miRNA:   3'- uaUCGCAG---CACGa-----CGCGCUGCU--CCGC- -5'
24318 3' -58.5 NC_005263.2 + 14245 0.67 0.415447
Target:  5'- cGUGGCGUgCGgGCUGgcuUGCGGCGGccGGCGc -3'
miRNA:   3'- -UAUCGCA-GCaCGAC---GCGCUGCU--CCGC- -5'
24318 3' -58.5 NC_005263.2 + 47682 0.67 0.406175
Target:  5'- -cGGCGauccUCGUGCUGUGCGGCaagcugcucGGCa -3'
miRNA:   3'- uaUCGC----AGCACGACGCGCUGcu-------CCGc -5'
24318 3' -58.5 NC_005263.2 + 4089 0.67 0.406175
Target:  5'- -cGGUG-CGUugUGCGCGACGAauGGCGa -3'
miRNA:   3'- uaUCGCaGCAcgACGCGCUGCU--CCGC- -5'
24318 3' -58.5 NC_005263.2 + 3175 0.68 0.379156
Target:  5'- cGUGGCG-CGgaauaacugccGCUGCGCGucgGCGAGcGCGg -3'
miRNA:   3'- -UAUCGCaGCa----------CGACGCGC---UGCUC-CGC- -5'
24318 3' -58.5 NC_005263.2 + 3993 0.68 0.379156
Target:  5'- -cGGCGUUaagcUGCUGCGUGACcucgaAGGCGc -3'
miRNA:   3'- uaUCGCAGc---ACGACGCGCUGc----UCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.