miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24319 3' -52.4 NC_005263.2 + 42269 1.07 0.002107
Target:  5'- cCGCACGACGGCCGACAACAAAUGGUAu -3'
miRNA:   3'- -GCGUGCUGCCGGCUGUUGUUUACCAU- -5'
24319 3' -52.4 NC_005263.2 + 27621 0.76 0.270768
Target:  5'- gGCGCGACGGUCGACcACucAUGGc- -3'
miRNA:   3'- gCGUGCUGCCGGCUGuUGuuUACCau -5'
24319 3' -52.4 NC_005263.2 + 30409 0.75 0.316223
Target:  5'- aGCGCGAcCGGCUG-CAGCAGGUcGGUGc -3'
miRNA:   3'- gCGUGCU-GCCGGCuGUUGUUUA-CCAU- -5'
24319 3' -52.4 NC_005263.2 + 22492 0.74 0.358323
Target:  5'- uCGCcgGCGGCGGCCGGCGGCGGuucGGc- -3'
miRNA:   3'- -GCG--UGCUGCCGGCUGUUGUUua-CCau -5'
24319 3' -52.4 NC_005263.2 + 35451 0.74 0.358323
Target:  5'- gGCGCGcCGGCCGACGACGAu----- -3'
miRNA:   3'- gCGUGCuGCCGGCUGUUGUUuaccau -5'
24319 3' -52.4 NC_005263.2 + 15129 0.74 0.367201
Target:  5'- uGCACGACGGCgGACAACGc------ -3'
miRNA:   3'- gCGUGCUGCCGgCUGUUGUuuaccau -5'
24319 3' -52.4 NC_005263.2 + 37557 0.73 0.413804
Target:  5'- uCGCGCaGACGGCCGACAACccgcgcaaGGa- -3'
miRNA:   3'- -GCGUG-CUGCCGGCUGUUGuuua----CCau -5'
24319 3' -52.4 NC_005263.2 + 24814 0.73 0.433439
Target:  5'- gGCGCGuauucggccuauACGGCCGGCGGCAAcggcGGUGc -3'
miRNA:   3'- gCGUGC------------UGCCGGCUGUUGUUua--CCAU- -5'
24319 3' -52.4 NC_005263.2 + 27444 0.72 0.463876
Target:  5'- aCGCuuuCGACGGCCG-CGACGAGcGGc- -3'
miRNA:   3'- -GCGu--GCUGCCGGCuGUUGUUUaCCau -5'
24319 3' -52.4 NC_005263.2 + 44429 0.72 0.478458
Target:  5'- uGaCGCGACGGCCGGCAcugucucgaACGAGcugcacaccggcuacUGGUAu -3'
miRNA:   3'- gC-GUGCUGCCGGCUGU---------UGUUU---------------ACCAU- -5'
24319 3' -52.4 NC_005263.2 + 45827 0.72 0.484776
Target:  5'- gCGCACGACcuGCCGACGGCGAAc---- -3'
miRNA:   3'- -GCGUGCUGc-CGGCUGUUGUUUaccau -5'
24319 3' -52.4 NC_005263.2 + 26519 0.71 0.516935
Target:  5'- gCGCGCGGCGucgacGCCGGCGGCGAGcacgcggcgcUGGa- -3'
miRNA:   3'- -GCGUGCUGC-----CGGCUGUUGUUU----------ACCau -5'
24319 3' -52.4 NC_005263.2 + 19711 0.71 0.527847
Target:  5'- uGCACGcCGGCCGGCuuC--GUGGUc -3'
miRNA:   3'- gCGUGCuGCCGGCUGuuGuuUACCAu -5'
24319 3' -52.4 NC_005263.2 + 2619 0.7 0.561057
Target:  5'- uGCGCGACaGGCCGACcGCGc--GGUu -3'
miRNA:   3'- gCGUGCUG-CCGGCUGuUGUuuaCCAu -5'
24319 3' -52.4 NC_005263.2 + 45359 0.7 0.561057
Target:  5'- gGCACGGCGGCCG-CGAUcucggcuguGAcgGGg- -3'
miRNA:   3'- gCGUGCUGCCGGCuGUUG---------UUuaCCau -5'
24319 3' -52.4 NC_005263.2 + 12544 0.7 0.572261
Target:  5'- aCGUucGCGGCGGCCGGCGGCGcc--GUAg -3'
miRNA:   3'- -GCG--UGCUGCCGGCUGUUGUuuacCAU- -5'
24319 3' -52.4 NC_005263.2 + 897 0.7 0.583516
Target:  5'- aGCGCGGCGGUCGcCGcCGGcgGGUu -3'
miRNA:   3'- gCGUGCUGCCGGCuGUuGUUuaCCAu -5'
24319 3' -52.4 NC_005263.2 + 47241 0.7 0.583516
Target:  5'- aGCGC--CGGCCGGC-ACGAcgGGUAc -3'
miRNA:   3'- gCGUGcuGCCGGCUGuUGUUuaCCAU- -5'
24319 3' -52.4 NC_005263.2 + 11222 0.7 0.606147
Target:  5'- aGUGCG--GGCgCGAUAGCGAAUGGUGa -3'
miRNA:   3'- gCGUGCugCCG-GCUGUUGUUUACCAU- -5'
24319 3' -52.4 NC_005263.2 + 29294 0.69 0.628874
Target:  5'- uGCACGGCGGCCGGguCGGCAu------ -3'
miRNA:   3'- gCGUGCUGCCGGCU--GUUGUuuaccau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.