miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24319 3' -52.4 NC_005263.2 + 42269 1.07 0.002107
Target:  5'- cCGCACGACGGCCGACAACAAAUGGUAu -3'
miRNA:   3'- -GCGUGCUGCCGGCUGUUGUUUACCAU- -5'
24319 3' -52.4 NC_005263.2 + 25894 0.67 0.751603
Target:  5'- aCGCcgGCGACGGCCG-CGACGuac-GUAa -3'
miRNA:   3'- -GCG--UGCUGCCGGCuGUUGUuuacCAU- -5'
24319 3' -52.4 NC_005263.2 + 3565 0.67 0.772718
Target:  5'- aGCGCGuCGGCCGACcACAu------ -3'
miRNA:   3'- gCGUGCuGCCGGCUGuUGUuuaccau -5'
24319 3' -52.4 NC_005263.2 + 44703 0.66 0.831958
Target:  5'- gCGCAcacguCGGCGGCCGACuGCAGc----- -3'
miRNA:   3'- -GCGU-----GCUGCCGGCUGuUGUUuaccau -5'
24319 3' -52.4 NC_005263.2 + 2619 0.7 0.561057
Target:  5'- uGCGCGACaGGCCGACcGCGc--GGUu -3'
miRNA:   3'- gCGUGCUG-CCGGCUGuUGUuuaCCAu -5'
24319 3' -52.4 NC_005263.2 + 12544 0.7 0.572261
Target:  5'- aCGUucGCGGCGGCCGGCGGCGcc--GUAg -3'
miRNA:   3'- -GCG--UGCUGCCGGCUGUUGUuuacCAU- -5'
24319 3' -52.4 NC_005263.2 + 29294 0.69 0.628874
Target:  5'- uGCACGGCGGCCGGguCGGCAu------ -3'
miRNA:   3'- gCGUGCUGCCGGCU--GUUGUuuaccau -5'
24319 3' -52.4 NC_005263.2 + 2693 0.69 0.640247
Target:  5'- gCGCcgGCGGCGGCCGACAGacCGAGUu--- -3'
miRNA:   3'- -GCG--UGCUGCCGGCUGUU--GUUUAccau -5'
24319 3' -52.4 NC_005263.2 + 21194 0.69 0.662958
Target:  5'- aCGCGCG-CGGCgCGG--GCGAGUGGg- -3'
miRNA:   3'- -GCGUGCuGCCG-GCUguUGUUUACCau -5'
24319 3' -52.4 NC_005263.2 + 33435 0.67 0.740844
Target:  5'- gCGCGCGuaGCGGUCGGCcACGAGcgcUGGc- -3'
miRNA:   3'- -GCGUGC--UGCCGGCUGuUGUUU---ACCau -5'
24319 3' -52.4 NC_005263.2 + 3253 0.68 0.718988
Target:  5'- uGCACGAucUGGUCGAUcg-GAAUGGUAg -3'
miRNA:   3'- gCGUGCU--GCCGGCUGuugUUUACCAU- -5'
24319 3' -52.4 NC_005263.2 + 27245 0.69 0.662958
Target:  5'- uCGCGcCGcCGGCCGAUAGCGuuaGGUc -3'
miRNA:   3'- -GCGU-GCuGCCGGCUGUUGUuuaCCAu -5'
24319 3' -52.4 NC_005263.2 + 22492 0.74 0.358323
Target:  5'- uCGCcgGCGGCGGCCGGCGGCGGuucGGc- -3'
miRNA:   3'- -GCG--UGCUGCCGGCUGUUGUUua-CCau -5'
24319 3' -52.4 NC_005263.2 + 32721 0.68 0.718988
Target:  5'- uGCACGGCGGCCGGgucgcuaccCGACAGcGUGc-- -3'
miRNA:   3'- gCGUGCUGCCGGCU---------GUUGUU-UACcau -5'
24319 3' -52.4 NC_005263.2 + 15129 0.74 0.367201
Target:  5'- uGCACGACGGCgGACAACGc------ -3'
miRNA:   3'- gCGUGCUGCCGgCUGUUGUuuaccau -5'
24319 3' -52.4 NC_005263.2 + 41361 0.69 0.651612
Target:  5'- gCGCGCGAUGGaCGugAcgcGCGAGUGuGUAc -3'
miRNA:   3'- -GCGUGCUGCCgGCugU---UGUUUAC-CAU- -5'
24319 3' -52.4 NC_005263.2 + 32925 0.68 0.718988
Target:  5'- uCGCGCGGCGGCUcGCGucgaucacugcGgAAAUGGUu -3'
miRNA:   3'- -GCGUGCUGCCGGcUGU-----------UgUUUACCAu -5'
24319 3' -52.4 NC_005263.2 + 15404 0.67 0.762231
Target:  5'- cCGCACGGCGG---GCAGCAAGccGGUGa -3'
miRNA:   3'- -GCGUGCUGCCggcUGUUGUUUa-CCAU- -5'
24319 3' -52.4 NC_005263.2 + 26519 0.71 0.516935
Target:  5'- gCGCGCGGCGucgacGCCGGCGGCGAGcacgcggcgcUGGa- -3'
miRNA:   3'- -GCGUGCUGC-----CGGCUGUUGUUU----------ACCau -5'
24319 3' -52.4 NC_005263.2 + 47241 0.7 0.583516
Target:  5'- aGCGC--CGGCCGGC-ACGAcgGGUAc -3'
miRNA:   3'- gCGUGcuGCCGGCUGuUGUUuaCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.