miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24319 3' -52.4 NC_005263.2 + 872 0.66 0.822581
Target:  5'- aCGCugACGACGccGuuGGCGAUcgGAAUGGUGa -3'
miRNA:   3'- -GCG--UGCUGC--CggCUGUUG--UUUACCAU- -5'
24319 3' -52.4 NC_005263.2 + 897 0.7 0.583516
Target:  5'- aGCGCGGCGGUCGcCGcCGGcgGGUu -3'
miRNA:   3'- gCGUGCUGCCGGCuGUuGUUuaCCAu -5'
24319 3' -52.4 NC_005263.2 + 1607 0.66 0.81299
Target:  5'- aGCGCGGCGGacacuUCGACGcCGAGUGcGUc -3'
miRNA:   3'- gCGUGCUGCC-----GGCUGUuGUUUAC-CAu -5'
24319 3' -52.4 NC_005263.2 + 2619 0.7 0.561057
Target:  5'- uGCGCGACaGGCCGACcGCGc--GGUu -3'
miRNA:   3'- gCGUGCUG-CCGGCUGuUGUuuaCCAu -5'
24319 3' -52.4 NC_005263.2 + 2693 0.69 0.640247
Target:  5'- gCGCcgGCGGCGGCCGACAGacCGAGUu--- -3'
miRNA:   3'- -GCG--UGCUGCCGGCUGUU--GUUUAccau -5'
24319 3' -52.4 NC_005263.2 + 3209 0.66 0.792204
Target:  5'- aGCGCGGCcaggaucgGGCCGACcucgggcGACGAcaGGUAg -3'
miRNA:   3'- gCGUGCUG--------CCGGCUG-------UUGUUuaCCAU- -5'
24319 3' -52.4 NC_005263.2 + 3253 0.68 0.718988
Target:  5'- uGCACGAucUGGUCGAUcg-GAAUGGUAg -3'
miRNA:   3'- gCGUGCU--GCCGGCUGuugUUUACCAU- -5'
24319 3' -52.4 NC_005263.2 + 3353 0.66 0.822581
Target:  5'- cCGCGCG-CGGUCGAgCGACcAGAcagugcgccaUGGUAg -3'
miRNA:   3'- -GCGUGCuGCCGGCU-GUUG-UUU----------ACCAU- -5'
24319 3' -52.4 NC_005263.2 + 3565 0.67 0.772718
Target:  5'- aGCGCGuCGGCCGACcACAu------ -3'
miRNA:   3'- gCGUGCuGCCGGCUGuUGUuuaccau -5'
24319 3' -52.4 NC_005263.2 + 6472 0.66 0.831958
Target:  5'- aGCGCGugGGCCG-CAguGCAAccaGGc- -3'
miRNA:   3'- gCGUGCugCCGGCuGU--UGUUua-CCau -5'
24319 3' -52.4 NC_005263.2 + 6839 0.68 0.729968
Target:  5'- gCGCAgCGACGGCgacacgacCGGCGACA---GGUAg -3'
miRNA:   3'- -GCGU-GCUGCCG--------GCUGUUGUuuaCCAU- -5'
24319 3' -52.4 NC_005263.2 + 7210 0.67 0.762231
Target:  5'- uCGCGCGACcaucGCCGGCGAcCAGAaGGc- -3'
miRNA:   3'- -GCGUGCUGc---CGGCUGUU-GUUUaCCau -5'
24319 3' -52.4 NC_005263.2 + 8683 0.66 0.793213
Target:  5'- cCG-ACGAacCGGUCGACGACAGGUGcGg- -3'
miRNA:   3'- -GCgUGCU--GCCGGCUGUUGUUUAC-Cau -5'
24319 3' -52.4 NC_005263.2 + 11222 0.7 0.606147
Target:  5'- aGUGCG--GGCgCGAUAGCGAAUGGUGa -3'
miRNA:   3'- gCGUGCugCCG-GCUGUUGUUUACCAU- -5'
24319 3' -52.4 NC_005263.2 + 11293 0.68 0.707916
Target:  5'- uGCGCGACGaGCagCGGCAAUuuAUGGc- -3'
miRNA:   3'- gCGUGCUGC-CG--GCUGUUGuuUACCau -5'
24319 3' -52.4 NC_005263.2 + 12544 0.7 0.572261
Target:  5'- aCGUucGCGGCGGCCGGCGGCGcc--GUAg -3'
miRNA:   3'- -GCG--UGCUGCCGGCUGUUGUuuacCAU- -5'
24319 3' -52.4 NC_005263.2 + 14260 0.68 0.718988
Target:  5'- gGCuuGCGGCGGCCGGCGcaacgcgcGCAu-UGGg- -3'
miRNA:   3'- gCG--UGCUGCCGGCUGU--------UGUuuACCau -5'
24319 3' -52.4 NC_005263.2 + 15129 0.74 0.367201
Target:  5'- uGCACGACGGCgGACAACGc------ -3'
miRNA:   3'- gCGUGCUGCCGgCUGUUGUuuaccau -5'
24319 3' -52.4 NC_005263.2 + 15404 0.67 0.762231
Target:  5'- cCGCACGGCGG---GCAGCAAGccGGUGa -3'
miRNA:   3'- -GCGUGCUGCCggcUGUUGUUUa-CCAU- -5'
24319 3' -52.4 NC_005263.2 + 17035 0.66 0.822581
Target:  5'- aGCGCGucGCGGCCaaGACGAuCGAcgGGc- -3'
miRNA:   3'- gCGUGC--UGCCGG--CUGUU-GUUuaCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.