miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24320 3' -55.2 NC_005263.2 + 47773 0.69 0.494766
Target:  5'- gGCGCUUG-UCGCG-CucUGGCagugcgGUGCCg -3'
miRNA:   3'- -CGCGGACuAGCGCaGuuACCG------CACGG- -5'
24320 3' -55.2 NC_005263.2 + 29698 0.69 0.494766
Target:  5'- gGCGUCagGAUCGUGcgCAcccGCGUGCCg -3'
miRNA:   3'- -CGCGGa-CUAGCGCa-GUuacCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 25762 0.69 0.498924
Target:  5'- cCGCgUGAUCuGCGUCGAgaaGcagcccgcgcgcugaGCGUGCCg -3'
miRNA:   3'- cGCGgACUAG-CGCAGUUa--C---------------CGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 34352 0.69 0.505192
Target:  5'- cGCGCCUGucgcCGUGUaaaccGGCaGUGCCc -3'
miRNA:   3'- -CGCGGACua--GCGCAguua-CCG-CACGG- -5'
24320 3' -55.2 NC_005263.2 + 17489 0.69 0.525253
Target:  5'- cGC-CCUGAUCGCGcgcggcgcgucgaUCGAUcaGGCGgcgGCUa -3'
miRNA:   3'- -CGcGGACUAGCGC-------------AGUUA--CCGCa--CGG- -5'
24320 3' -55.2 NC_005263.2 + 31003 0.69 0.537005
Target:  5'- aCGCCaGAUCGUGcagCAGUgcggcgaggcgcGGCGUGCg -3'
miRNA:   3'- cGCGGaCUAGCGCa--GUUA------------CCGCACGg -5'
24320 3' -55.2 NC_005263.2 + 38355 0.69 0.537005
Target:  5'- gGCGaCCggcGAaaugCGCcUCGAaGGCGUGCCg -3'
miRNA:   3'- -CGC-GGa--CUa---GCGcAGUUaCCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 45888 0.69 0.537005
Target:  5'- aCGCCgUGAUCGCG-CAggGGCGaaaGaCCa -3'
miRNA:   3'- cGCGG-ACUAGCGCaGUuaCCGCa--C-GG- -5'
24320 3' -55.2 NC_005263.2 + 40900 0.69 0.537005
Target:  5'- uCGCCUGAUCGCuggaaaGGCGcaGCCg -3'
miRNA:   3'- cGCGGACUAGCGcaguuaCCGCa-CGG- -5'
24320 3' -55.2 NC_005263.2 + 30322 0.69 0.537005
Target:  5'- uGCGCCUcGAaaauUUGCGagAAgcGCGUGCCg -3'
miRNA:   3'- -CGCGGA-CU----AGCGCagUUacCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 25974 0.68 0.547767
Target:  5'- aGCGCCccguccggcGAUCGCG-CuugcaGCGUGCCg -3'
miRNA:   3'- -CGCGGa--------CUAGCGCaGuuac-CGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 4639 0.68 0.547767
Target:  5'- aGCGCC--AUCGCGaUC-AUGGCGacgggcagGCCg -3'
miRNA:   3'- -CGCGGacUAGCGC-AGuUACCGCa-------CGG- -5'
24320 3' -55.2 NC_005263.2 + 10914 0.68 0.552091
Target:  5'- cGCGCUgggggaugccgcacgUGAUCGCGUCGugcggGGUGaGCg -3'
miRNA:   3'- -CGCGG---------------ACUAGCGCAGUua---CCGCaCGg -5'
24320 3' -55.2 NC_005263.2 + 4205 0.68 0.552091
Target:  5'- uGCGCCUGAaucugcagcugCGCGUCGAcgcucgaaaacgucGGCGUcaggauGCCg -3'
miRNA:   3'- -CGCGGACUa----------GCGCAGUUa-------------CCGCA------CGG- -5'
24320 3' -55.2 NC_005263.2 + 44655 0.68 0.555341
Target:  5'- uGCGCCUcGAU-GCGUCGcgcgcgccgaagaaGUcGGCG-GCCa -3'
miRNA:   3'- -CGCGGA-CUAgCGCAGU--------------UA-CCGCaCGG- -5'
24320 3' -55.2 NC_005263.2 + 5180 0.68 0.55751
Target:  5'- uGCGCCUGAuugaacaUCGCcugCAGgcgcGGCGUcGCUa -3'
miRNA:   3'- -CGCGGACU-------AGCGca-GUUa---CCGCA-CGG- -5'
24320 3' -55.2 NC_005263.2 + 29758 0.68 0.558596
Target:  5'- uGCGCCgGGUucUGCGgguUCAGcaGCGUGCCg -3'
miRNA:   3'- -CGCGGaCUA--GCGC---AGUUacCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 9135 0.68 0.568393
Target:  5'- uUGCC-GGUCGCGUCGugguucgucucauGcuuguUGGCcGUGCCg -3'
miRNA:   3'- cGCGGaCUAGCGCAGU-------------U-----ACCG-CACGG- -5'
24320 3' -55.2 NC_005263.2 + 24825 0.68 0.569484
Target:  5'- gGCGCCUGuccccaggGCuUCcacGGCGUGCCg -3'
miRNA:   3'- -CGCGGACuag-----CGcAGuuaCCGCACGG- -5'
24320 3' -55.2 NC_005263.2 + 34103 0.68 0.590307
Target:  5'- uGCGCCUcg-CGCGUCAguucgaaGUGGaCGUGa- -3'
miRNA:   3'- -CGCGGAcuaGCGCAGU-------UACC-GCACgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.