miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24322 5' -54.4 NC_005263.2 + 9822 0.71 0.432089
Target:  5'- aGGGCGUGCaucacGUUGACGaacgGCGCGGCGc -3'
miRNA:   3'- -CCUGUACGca---UAGUUGCg---CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 30269 0.71 0.441902
Target:  5'- cGGCGaagcgcUGCGcaAUCGGgcCGCGCGCGGCAu -3'
miRNA:   3'- cCUGU------ACGCa-UAGUU--GCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 47709 0.71 0.451841
Target:  5'- aGGAuCGUGCGc-UCuACGCGCuCGGCAa -3'
miRNA:   3'- -CCU-GUACGCauAGuUGCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 44835 0.7 0.472075
Target:  5'- cGGACugcgagGCGaUAcUCGACGCcugucuGCGCGGCGa -3'
miRNA:   3'- -CCUGua----CGC-AU-AGUUGCG------CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 16404 0.7 0.473099
Target:  5'- cGGCAUcGCGggugcgguacucggcGUCGGCGCugGCGCGGCGg -3'
miRNA:   3'- cCUGUA-CGCa--------------UAGUUGCG--CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 37405 0.7 0.492759
Target:  5'- cGACGUGC--AUC-GCGuCGCGCGGCc -3'
miRNA:   3'- cCUGUACGcaUAGuUGC-GCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 3491 0.7 0.492759
Target:  5'- -cGCA-GCGaGUCGGgcaaguuguCGCGCGCGGCAa -3'
miRNA:   3'- ccUGUaCGCaUAGUU---------GCGCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 33996 0.7 0.492759
Target:  5'- aGGCcgGcCGUGUUGGCuGCGuCGCGGCGc -3'
miRNA:   3'- cCUGuaC-GCAUAGUUG-CGC-GCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 33679 0.7 0.513848
Target:  5'- cGGGC--GCGaAUCuugGCGCaGCGCGGCGg -3'
miRNA:   3'- -CCUGuaCGCaUAGu--UGCG-CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 46824 0.7 0.513848
Target:  5'- -----cGCGUAacgCAACGCGCGCcaGGCGg -3'
miRNA:   3'- ccuguaCGCAUa--GUUGCGCGCG--CCGU- -5'
24322 5' -54.4 NC_005263.2 + 37610 0.7 0.513848
Target:  5'- -aACGUGCGcuUCGACGgcaagcaccUGCGCGGCGa -3'
miRNA:   3'- ccUGUACGCauAGUUGC---------GCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 2673 0.7 0.513848
Target:  5'- aGGCGUGCGUuguggUAGCugauCGCGCGGCc -3'
miRNA:   3'- cCUGUACGCAua---GUUGc---GCGCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 2653 0.69 0.524531
Target:  5'- -uGCcgGCGUAUCGGCG-GCGacacCGGCAg -3'
miRNA:   3'- ccUGuaCGCAUAGUUGCgCGC----GCCGU- -5'
24322 5' -54.4 NC_005263.2 + 11802 0.69 0.524531
Target:  5'- aGGACGUcGCGUGUCGcUGCauguCGUGGCu -3'
miRNA:   3'- -CCUGUA-CGCAUAGUuGCGc---GCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 8740 0.69 0.524531
Target:  5'- cGGCGaGCGggGUCGagacguuuuuaACGCuGCGCGGCAg -3'
miRNA:   3'- cCUGUaCGCa-UAGU-----------UGCG-CGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 9374 0.69 0.54614
Target:  5'- cGGCGgcUGCGggaauuUCAGCGCG-GCGGCc -3'
miRNA:   3'- cCUGU--ACGCau----AGUUGCGCgCGCCGu -5'
24322 5' -54.4 NC_005263.2 + 46100 0.69 0.54614
Target:  5'- uGACGUcGgGUAUCAucCGCGC-CGGCGu -3'
miRNA:   3'- cCUGUA-CgCAUAGUu-GCGCGcGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 34040 0.69 0.54614
Target:  5'- uGGGCcgGCGcggcgcgcUCAAUGCGCucgacGCGGCGc -3'
miRNA:   3'- -CCUGuaCGCau------AGUUGCGCG-----CGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 19853 0.69 0.54614
Target:  5'- cGACgAUGCGaacaagGUCAcgGCGaGCGCGGCGa -3'
miRNA:   3'- cCUG-UACGCa-----UAGU--UGCgCGCGCCGU- -5'
24322 5' -54.4 NC_005263.2 + 27106 0.69 0.54614
Target:  5'- -----gGCGcuUCGACGgGCGCGGCGa -3'
miRNA:   3'- ccuguaCGCauAGUUGCgCGCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.