Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24325 | 3' | -55 | NC_005263.2 | + | 11220 | 0.65 | 0.731999 |
Target: 5'- cCCGUGAUuuc--GCCAagcGCGCCcGGGUCg -3' miRNA: 3'- -GGCACUGcuuucUGGU---CGCGG-UCCAG- -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 41245 | 0.66 | 0.721326 |
Target: 5'- cUCGUGcGCGAGGGcuACCuGuCGCC-GGUCg -3' miRNA: 3'- -GGCAC-UGCUUUC--UGGuC-GCGGuCCAG- -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 20138 | 0.66 | 0.721326 |
Target: 5'- gCGcGACGGuacGGCCGucGCGCCGGG-Ca -3' miRNA: 3'- gGCaCUGCUuu-CUGGU--CGCGGUCCaG- -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 29542 | 0.66 | 0.710563 |
Target: 5'- gCCGgGACGcc--ACCGGUGCCGGGc- -3' miRNA: 3'- -GGCaCUGCuuucUGGUCGCGGUCCag -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 22534 | 0.66 | 0.699723 |
Target: 5'- gCGUGACGGgcGGCgCGGaCGCCGacGUCg -3' miRNA: 3'- gGCACUGCUuuCUG-GUC-GCGGUc-CAG- -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 46096 | 0.67 | 0.666848 |
Target: 5'- gCCGUGACGucGGGuAUCAuccGCGCCGGcGUg -3' miRNA: 3'- -GGCACUGCu-UUC-UGGU---CGCGGUC-CAg -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 14361 | 0.67 | 0.666848 |
Target: 5'- uUCGuUGACGAcGGGCCcGaUGCCGGGcCg -3' miRNA: 3'- -GGC-ACUGCUuUCUGGuC-GCGGUCCaG- -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 19177 | 0.67 | 0.663539 |
Target: 5'- gCCGUGGCGAGcgaacugaugggacGGAUCAGCGC--GG-Cg -3' miRNA: 3'- -GGCACUGCUU--------------UCUGGUCGCGguCCaG- -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 8547 | 0.67 | 0.633675 |
Target: 5'- gCgGUGAUGAAugccgcGACCAGCGUCGuccaGUCg -3' miRNA: 3'- -GgCACUGCUUu-----CUGGUCGCGGUc---CAG- -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 30040 | 0.67 | 0.633675 |
Target: 5'- gCGUGACGAucGAgUgguGCGUCAGGa- -3' miRNA: 3'- gGCACUGCUuuCUgGu--CGCGGUCCag -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 22378 | 0.67 | 0.633675 |
Target: 5'- gUCGUGcACGGc--GCgCAGCGCCAGGa- -3' miRNA: 3'- -GGCAC-UGCUuucUG-GUCGCGGUCCag -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 38383 | 0.67 | 0.622601 |
Target: 5'- gCUGUGGCGAAcGAgCGcaagcGCGCCGcagcGGUCg -3' miRNA: 3'- -GGCACUGCUUuCUgGU-----CGCGGU----CCAG- -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 42780 | 0.68 | 0.611535 |
Target: 5'- gCGUGACGAu---CCAGCGCgaAGG-Cg -3' miRNA: 3'- gGCACUGCUuucuGGUCGCGg-UCCaG- -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 14153 | 0.68 | 0.611535 |
Target: 5'- gCCGccuUGGCGAcuucGGGCCGGCGgCCGGuGUg -3' miRNA: 3'- -GGC---ACUGCUu---UCUGGUCGC-GGUC-CAg -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 7407 | 0.68 | 0.611535 |
Target: 5'- uCCaGUGcgauGCGGGAGAUCGGCGCgucgagCAGGUa -3' miRNA: 3'- -GG-CAC----UGCUUUCUGGUCGCG------GUCCAg -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 23853 | 0.68 | 0.611535 |
Target: 5'- uUCGUGACu---GuCCAGUgcuucaGCCAGGUCg -3' miRNA: 3'- -GGCACUGcuuuCuGGUCG------CGGUCCAG- -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 28108 | 0.69 | 0.545833 |
Target: 5'- aCGUGuCGAucgcAAGugCcGCGCCGGGg- -3' miRNA: 3'- gGCACuGCU----UUCugGuCGCGGUCCag -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 17963 | 0.69 | 0.545833 |
Target: 5'- gCCGUGaACGGcau-CCAGCGCCAGa-- -3' miRNA: 3'- -GGCAC-UGCUuucuGGUCGCGGUCcag -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 15619 | 0.69 | 0.535076 |
Target: 5'- aCGcGGCGAAGuucGugC-GCGCCAGGUUg -3' miRNA: 3'- gGCaCUGCUUU---CugGuCGCGGUCCAG- -5' |
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24325 | 3' | -55 | NC_005263.2 | + | 30766 | 0.69 | 0.535076 |
Target: 5'- aCCGcGAUGccgaacgucGAAGccACCGGCGCCGGGcCg -3' miRNA: 3'- -GGCaCUGC---------UUUC--UGGUCGCGGUCCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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