Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24326 | 5' | -56.7 | NC_005263.2 | + | 27960 | 0.72 | 0.313084 |
Target: 5'- aCGGCGCGGAUGgcccagagcUGCUGcgCGCGAg-- -3' miRNA: 3'- -GCCGCGCUUGC---------ACGGCuaGCGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 41165 | 0.72 | 0.313084 |
Target: 5'- gCGGCGUGGGCG-GCCG-UCGuCGAUa- -3' miRNA: 3'- -GCCGCGCUUGCaCGGCuAGC-GCUAga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 29578 | 0.71 | 0.328661 |
Target: 5'- gCGGCGCGAgccgcuuugaucGCGU-CC-AUCGCGAUCc -3' miRNA: 3'- -GCCGCGCU------------UGCAcGGcUAGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 3751 | 0.71 | 0.336662 |
Target: 5'- -aGCGCGuACGUGCCGuacaaugucgacGUCGCGuUCUg -3' miRNA: 3'- gcCGCGCuUGCACGGC------------UAGCGCuAGA- -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 41496 | 0.71 | 0.344804 |
Target: 5'- -cGCGcCGAGCGcgccGCCGAaCGCGAUCg -3' miRNA: 3'- gcCGC-GCUUGCa---CGGCUaGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 3311 | 0.71 | 0.353922 |
Target: 5'- gGGCGCGGccgcgcgguguucaACGUcugcgcgccgccggcGCCGcgCGCGGUCg -3' miRNA: 3'- gCCGCGCU--------------UGCA---------------CGGCuaGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 8286 | 0.71 | 0.361508 |
Target: 5'- -aGCGCGAGCGgcGUCGGUCG-GAUCg -3' miRNA: 3'- gcCGCGCUUGCa-CGGCUAGCgCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 6508 | 0.7 | 0.370069 |
Target: 5'- aCGGCGCGuugaaGCCGGUCGUGAg-- -3' miRNA: 3'- -GCCGCGCuugcaCGGCUAGCGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 26329 | 0.7 | 0.370069 |
Target: 5'- uCGGCGUGAAgGUcgguugcgggacGuuGGUCGUGGUCa -3' miRNA: 3'- -GCCGCGCUUgCA------------CggCUAGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 37843 | 0.7 | 0.378767 |
Target: 5'- gCGGCGCGAuGCGaaGCgcAUCGCGAUCg -3' miRNA: 3'- -GCCGCGCU-UGCa-CGgcUAGCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 20996 | 0.7 | 0.387601 |
Target: 5'- -uGCGCGucGACGUGCCGGcguuUCagGCGAUCa -3' miRNA: 3'- gcCGCGC--UUGCACGGCU----AG--CGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 14193 | 0.7 | 0.387601 |
Target: 5'- gGGCagcaagcguuccGCGAcgGCGUGCCGuUCGCGcgCa -3' miRNA: 3'- gCCG------------CGCU--UGCACGGCuAGCGCuaGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 20271 | 0.7 | 0.392069 |
Target: 5'- gCGGCGcCGAauucaacGCGUGCCGcgaaggugacgcCGCGAUCa -3' miRNA: 3'- -GCCGC-GCU-------UGCACGGCua----------GCGCUAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 1583 | 0.7 | 0.39657 |
Target: 5'- aCGGCacGCuuGGACGUGCCGAgcagCGCGGc-- -3' miRNA: 3'- -GCCG--CG--CUUGCACGGCUa---GCGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 9768 | 0.7 | 0.39657 |
Target: 5'- cCGGuCGCc-GCGUGCaCGGUCGCGcgCg -3' miRNA: 3'- -GCC-GCGcuUGCACG-GCUAGCGCuaGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 33899 | 0.7 | 0.405672 |
Target: 5'- uGcGCGCGAACGgcacGCCG-UCGCGGa-- -3' miRNA: 3'- gC-CGCGCUUGCa---CGGCuAGCGCUaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 10152 | 0.7 | 0.414903 |
Target: 5'- cCGGCGCGGcauCG-GCCGGUUGCGc--- -3' miRNA: 3'- -GCCGCGCUu--GCaCGGCUAGCGCuaga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 2759 | 0.69 | 0.424263 |
Target: 5'- gCGGC-CGc-CGUGCCGGUCGUGuUCg -3' miRNA: 3'- -GCCGcGCuuGCACGGCUAGCGCuAGa -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 9720 | 0.69 | 0.428042 |
Target: 5'- gCGGCGCGcuugcGCucguucgccacagcaGUGUCGAUCGCGGUg- -3' miRNA: 3'- -GCCGCGCu----UG---------------CACGGCUAGCGCUAga -5' |
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24326 | 5' | -56.7 | NC_005263.2 | + | 6183 | 0.69 | 0.430889 |
Target: 5'- gCGGCGC--GCGUuucgcauucaggaaGCCGGUCGCGuugGUCUu -3' miRNA: 3'- -GCCGCGcuUGCA--------------CGGCUAGCGC---UAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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