miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24328 3' -53 NC_005263.2 + 46539 1.11 0.001091
Target:  5'- aGCGUGCCGUCUAUACCGUGCGCAACAc -3'
miRNA:   3'- -CGCACGGCAGAUAUGGCACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 9509 0.79 0.171939
Target:  5'- cGCGUGCgCGggCUGaaucgugcgGCCGUGCGCGGCAg -3'
miRNA:   3'- -CGCACG-GCa-GAUa--------UGGCACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 9588 0.76 0.258356
Target:  5'- uGCGUGCCGUCccAUugCGgcaGCGCGAUc -3'
miRNA:   3'- -CGCACGGCAGa-UAugGCa--CGCGUUGu -5'
24328 3' -53 NC_005263.2 + 21580 0.74 0.359381
Target:  5'- cGCGUGCucgccgccggCGUCgacGCCGcGCGCAACAg -3'
miRNA:   3'- -CGCACG----------GCAGauaUGGCaCGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 23544 0.73 0.414504
Target:  5'- gGCGUGCCG-----ACCGUGgCGCAGCc -3'
miRNA:   3'- -CGCACGGCagauaUGGCAC-GCGUUGu -5'
24328 3' -53 NC_005263.2 + 17379 0.71 0.495486
Target:  5'- cGCGUgaaGCUGUCU--GCCG-GCGCGGCc -3'
miRNA:   3'- -CGCA---CGGCAGAuaUGGCaCGCGUUGu -5'
24328 3' -53 NC_005263.2 + 31994 0.71 0.516857
Target:  5'- -aGUGCCGUCUcggcUGCCGUagcuGCGCGGg- -3'
miRNA:   3'- cgCACGGCAGAu---AUGGCA----CGCGUUgu -5'
24328 3' -53 NC_005263.2 + 10550 0.71 0.527681
Target:  5'- cGCGgGuuGUCg--GCCGUcuGCGCGACGu -3'
miRNA:   3'- -CGCaCggCAGauaUGGCA--CGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 42622 0.71 0.527681
Target:  5'- uGCGauucagGUCGUCUAcGCCGaagcgaaguggcUGCGCAACGa -3'
miRNA:   3'- -CGCa-----CGGCAGAUaUGGC------------ACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 14214 0.7 0.549571
Target:  5'- gGCGUGCCGU-----UCGcGCGCAACGa -3'
miRNA:   3'- -CGCACGGCAgauauGGCaCGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 800 0.7 0.549571
Target:  5'- aGCGUGCCGgcc--GCCG-GCGCAGg- -3'
miRNA:   3'- -CGCACGGCagauaUGGCaCGCGUUgu -5'
24328 3' -53 NC_005263.2 + 14248 0.7 0.560622
Target:  5'- gGCGUGCgGgCUGgcuugcggcgGCCG-GCGCAACGc -3'
miRNA:   3'- -CGCACGgCaGAUa---------UGGCaCGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 40611 0.7 0.560622
Target:  5'- ---cGCCGUCa--GCgGUGCGCGGCAc -3'
miRNA:   3'- cgcaCGGCAGauaUGgCACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 17816 0.7 0.594104
Target:  5'- gGCG-GCCGaggAUGCCGcGCGCGGCc -3'
miRNA:   3'- -CGCaCGGCagaUAUGGCaCGCGUUGu -5'
24328 3' -53 NC_005263.2 + 19291 0.69 0.605344
Target:  5'- cGCGUGCgCGUCacgGUcACCGUGaCGCGc-- -3'
miRNA:   3'- -CGCACG-GCAGa--UA-UGGCAC-GCGUugu -5'
24328 3' -53 NC_005263.2 + 14079 0.69 0.605344
Target:  5'- cGCGccgGCCcauGUCggcugGUACCGgcUGCGCGGCGg -3'
miRNA:   3'- -CGCa--CGG---CAGa----UAUGGC--ACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 37933 0.69 0.639171
Target:  5'- gGCGcGCCGcCggcaGCCgGUGCGCAACc -3'
miRNA:   3'- -CGCaCGGCaGaua-UGG-CACGCGUUGu -5'
24328 3' -53 NC_005263.2 + 29782 0.69 0.653827
Target:  5'- aGCGUGCCGUCggcgucguagauuuCCG-GCGCGuauuGCGa -3'
miRNA:   3'- -CGCACGGCAGauau----------GGCaCGCGU----UGU- -5'
24328 3' -53 NC_005263.2 + 8576 0.68 0.661705
Target:  5'- gGCGUGUCGUCcGUuacGCCGcGCGCuucCAu -3'
miRNA:   3'- -CGCACGGCAGaUA---UGGCaCGCGuu-GU- -5'
24328 3' -53 NC_005263.2 + 11182 0.68 0.684124
Target:  5'- cGCGUGCCGUCcgGUauaGCCaauugGUG-GCAGCu -3'
miRNA:   3'- -CGCACGGCAGa-UA---UGG-----CACgCGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.