miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24328 3' -53 NC_005263.2 + 800 0.7 0.549571
Target:  5'- aGCGUGCCGgcc--GCCG-GCGCAGg- -3'
miRNA:   3'- -CGCACGGCagauaUGGCaCGCGUUgu -5'
24328 3' -53 NC_005263.2 + 1538 0.68 0.70523
Target:  5'- uUGUGCCGUUcgAUGCCGagcacguucguguUGCGCAc-- -3'
miRNA:   3'- cGCACGGCAGa-UAUGGC-------------ACGCGUugu -5'
24328 3' -53 NC_005263.2 + 1578 0.68 0.695261
Target:  5'- aGCGUGCCGUCgAUACCcaUGCuGUAu-- -3'
miRNA:   3'- -CGCACGGCAGaUAUGGc-ACG-CGUugu -5'
24328 3' -53 NC_005263.2 + 2432 0.66 0.810836
Target:  5'- aGCGUGCC-UUgGUACg--GCGCGGCAa -3'
miRNA:   3'- -CGCACGGcAGaUAUGgcaCGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 2698 0.67 0.749739
Target:  5'- cGCG-GCCGcUCggcagGUGCa-UGCGCAGCGc -3'
miRNA:   3'- -CGCaCGGC-AGa----UAUGgcACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 7963 0.68 0.695261
Target:  5'- aGCGUGCCaUC-AUGCCGccuUGcCGCAugGa -3'
miRNA:   3'- -CGCACGGcAGaUAUGGC---AC-GCGUugU- -5'
24328 3' -53 NC_005263.2 + 8576 0.68 0.661705
Target:  5'- gGCGUGUCGUCcGUuacGCCGcGCGCuucCAu -3'
miRNA:   3'- -CGCACGGCAGaUA---UGGCaCGCGuu-GU- -5'
24328 3' -53 NC_005263.2 + 9509 0.79 0.171939
Target:  5'- cGCGUGCgCGggCUGaaucgugcgGCCGUGCGCGGCAg -3'
miRNA:   3'- -CGCACG-GCa-GAUa--------UGGCACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 9588 0.76 0.258356
Target:  5'- uGCGUGCCGUCccAUugCGgcaGCGCGAUc -3'
miRNA:   3'- -CGCACGGCAGa-UAugGCa--CGCGUUGu -5'
24328 3' -53 NC_005263.2 + 9657 0.66 0.809869
Target:  5'- aGCGUcucgaucGCCGUCUugACCGUG-GcCGGCGu -3'
miRNA:   3'- -CGCA-------CGGCAGAuaUGGCACgC-GUUGU- -5'
24328 3' -53 NC_005263.2 + 9999 0.67 0.71733
Target:  5'- ---cGCCGUCUugcgcgccagGUGCgG-GCGCAGCAc -3'
miRNA:   3'- cgcaCGGCAGA----------UAUGgCaCGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 10550 0.71 0.527681
Target:  5'- cGCGgGuuGUCg--GCCGUcuGCGCGACGu -3'
miRNA:   3'- -CGCaCggCAGauaUGGCA--CGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 11182 0.68 0.684124
Target:  5'- cGCGUGCCGUCcgGUauaGCCaauugGUG-GCAGCu -3'
miRNA:   3'- -CGCACGGCAGa-UA---UGG-----CACgCGUUGu -5'
24328 3' -53 NC_005263.2 + 11265 0.67 0.728238
Target:  5'- gGCGUGCgacccauuccCGgaaugAUCGUGCGCGACGa -3'
miRNA:   3'- -CGCACG----------GCagauaUGGCACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 12388 0.66 0.781017
Target:  5'- gGCGUcucGCCGUCUucgaccuUGCCG-GC-CGGCAg -3'
miRNA:   3'- -CGCA---CGGCAGAu------AUGGCaCGcGUUGU- -5'
24328 3' -53 NC_005263.2 + 14079 0.69 0.605344
Target:  5'- cGCGccgGCCcauGUCggcugGUACCGgcUGCGCGGCGg -3'
miRNA:   3'- -CGCa--CGG---CAGa----UAUGGC--ACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 14214 0.7 0.549571
Target:  5'- gGCGUGCCGU-----UCGcGCGCAACGa -3'
miRNA:   3'- -CGCACGGCAgauauGGCaCGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 14248 0.7 0.560622
Target:  5'- gGCGUGCgGgCUGgcuugcggcgGCCG-GCGCAACGc -3'
miRNA:   3'- -CGCACGgCaGAUa---------UGGCaCGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 17379 0.71 0.495486
Target:  5'- cGCGUgaaGCUGUCU--GCCG-GCGCGGCc -3'
miRNA:   3'- -CGCA---CGGCAGAuaUGGCaCGCGUUGu -5'
24328 3' -53 NC_005263.2 + 17465 0.66 0.801078
Target:  5'- cGCGUucgaCGUCaacGCCGgccgGCGCAGCAu -3'
miRNA:   3'- -CGCAcg--GCAGauaUGGCa---CGCGUUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.