miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24328 3' -53 NC_005263.2 + 46539 1.11 0.001091
Target:  5'- aGCGUGCCGUCUAUACCGUGCGCAACAc -3'
miRNA:   3'- -CGCACGGCAGAUAUGGCACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 35578 0.67 0.71733
Target:  5'- uGCG-GCCGUCagaaucugACCGgGCGCAAa- -3'
miRNA:   3'- -CGCaCGGCAGaua-----UGGCaCGCGUUgu -5'
24328 3' -53 NC_005263.2 + 30446 0.68 0.706334
Target:  5'- cCGUGCCaaaacgcggGUCgAUGCCGUaGCGcCGACGg -3'
miRNA:   3'- cGCACGG---------CAGaUAUGGCA-CGC-GUUGU- -5'
24328 3' -53 NC_005263.2 + 1578 0.68 0.695261
Target:  5'- aGCGUGCCGUCgAUACCcaUGCuGUAu-- -3'
miRNA:   3'- -CGCACGGCAGaUAUGGc-ACG-CGUugu -5'
24328 3' -53 NC_005263.2 + 800 0.7 0.549571
Target:  5'- aGCGUGCCGgcc--GCCG-GCGCAGg- -3'
miRNA:   3'- -CGCACGGCagauaUGGCaCGCGUUgu -5'
24328 3' -53 NC_005263.2 + 10550 0.71 0.527681
Target:  5'- cGCGgGuuGUCg--GCCGUcuGCGCGACGu -3'
miRNA:   3'- -CGCaCggCAGauaUGGCA--CGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 2432 0.66 0.810836
Target:  5'- aGCGUGCC-UUgGUACg--GCGCGGCAa -3'
miRNA:   3'- -CGCACGGcAGaUAUGgcaCGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 17465 0.66 0.801078
Target:  5'- cGCGUucgaCGUCaacGCCGgccgGCGCAGCAu -3'
miRNA:   3'- -CGCAcg--GCAGauaUGGCa---CGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 19148 0.67 0.728238
Target:  5'- uGCGcGUCGUCgugACCGUgcauccgccgGCGCGGCu -3'
miRNA:   3'- -CGCaCGGCAGauaUGGCA----------CGCGUUGu -5'
24328 3' -53 NC_005263.2 + 27988 0.67 0.71733
Target:  5'- cGCGcuUGCCGUa---ACCcUGCGCGGCGa -3'
miRNA:   3'- -CGC--ACGGCAgauaUGGcACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 14079 0.69 0.605344
Target:  5'- cGCGccgGCCcauGUCggcugGUACCGgcUGCGCGGCGg -3'
miRNA:   3'- -CGCa--CGG---CAGa----UAUGGC--ACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 9509 0.79 0.171939
Target:  5'- cGCGUGCgCGggCUGaaucgugcgGCCGUGCGCGGCAg -3'
miRNA:   3'- -CGCACG-GCa-GAUa--------UGGCACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 12388 0.66 0.781017
Target:  5'- gGCGUcucGCCGUCUucgaccuUGCCG-GC-CGGCAg -3'
miRNA:   3'- -CGCA---CGGCAGAu------AUGGCaCGcGUUGU- -5'
24328 3' -53 NC_005263.2 + 23544 0.73 0.414504
Target:  5'- gGCGUGCCG-----ACCGUGgCGCAGCc -3'
miRNA:   3'- -CGCACGGCagauaUGGCAC-GCGUUGu -5'
24328 3' -53 NC_005263.2 + 9999 0.67 0.71733
Target:  5'- ---cGCCGUCUugcgcgccagGUGCgG-GCGCAGCAc -3'
miRNA:   3'- cgcaCGGCAGA----------UAUGgCaCGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 42893 0.66 0.791134
Target:  5'- gGCGUGCCGcgCgcucGCCuggacgcgaGUGCGCgAGCAa -3'
miRNA:   3'- -CGCACGGCa-Gaua-UGG---------CACGCG-UUGU- -5'
24328 3' -53 NC_005263.2 + 44349 0.66 0.820396
Target:  5'- cCGUGCCG-CUGc-CCGcGCGCgAGCAg -3'
miRNA:   3'- cGCACGGCaGAUauGGCaCGCG-UUGU- -5'
24328 3' -53 NC_005263.2 + 31994 0.71 0.516857
Target:  5'- -aGUGCCGUCUcggcUGCCGUagcuGCGCGGg- -3'
miRNA:   3'- cgCACGGCAGAu---AUGGCA----CGCGUUgu -5'
24328 3' -53 NC_005263.2 + 11265 0.67 0.728238
Target:  5'- gGCGUGCgacccauuccCGgaaugAUCGUGCGCGACGa -3'
miRNA:   3'- -CGCACG----------GCagauaUGGCACGCGUUGU- -5'
24328 3' -53 NC_005263.2 + 29782 0.69 0.653827
Target:  5'- aGCGUGCCGUCggcgucguagauuuCCG-GCGCGuauuGCGa -3'
miRNA:   3'- -CGCACGGCAGauau----------GGCaCGCGU----UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.