miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24330 5' -56 NC_005263.2 + 47510 1.06 0.001027
Target:  5'- gCGCGAAGCACAUCGCGGCGCUCGAAUa -3'
miRNA:   3'- -GCGCUUCGUGUAGCGCCGCGAGCUUA- -5'
24330 5' -56 NC_005263.2 + 1444 0.81 0.068762
Target:  5'- gCGCGAGGCu--UCGCGGCGCUCGc-- -3'
miRNA:   3'- -GCGCUUCGuguAGCGCCGCGAGCuua -5'
24330 5' -56 NC_005263.2 + 17145 0.8 0.081885
Target:  5'- gGCGAAGCggucgACGUCGCGGUGUUCGGc- -3'
miRNA:   3'- gCGCUUCG-----UGUAGCGCCGCGAGCUua -5'
24330 5' -56 NC_005263.2 + 33992 0.79 0.105222
Target:  5'- gGCGAGGCcggccguguuggcuGCGUCGCGGCGCgCGAu- -3'
miRNA:   3'- gCGCUUCG--------------UGUAGCGCCGCGaGCUua -5'
24330 5' -56 NC_005263.2 + 19122 0.76 0.16196
Target:  5'- cCGCGccGAGCGCAUCGCcgGGCGCUUGc-- -3'
miRNA:   3'- -GCGC--UUCGUGUAGCG--CCGCGAGCuua -5'
24330 5' -56 NC_005263.2 + 31025 0.75 0.180809
Target:  5'- gGCGAGGCGCggCGUGcGCuGCUCGAGc -3'
miRNA:   3'- gCGCUUCGUGuaGCGC-CG-CGAGCUUa -5'
24330 5' -56 NC_005263.2 + 41379 0.75 0.196197
Target:  5'- gCGCGAGuguGUACGU-GUGGCGCUCGAGc -3'
miRNA:   3'- -GCGCUU---CGUGUAgCGCCGCGAGCUUa -5'
24330 5' -56 NC_005263.2 + 20778 0.75 0.196197
Target:  5'- cCGCGccGCugAUCGuCGGCGCgUCGggUc -3'
miRNA:   3'- -GCGCuuCGugUAGC-GCCGCG-AGCuuA- -5'
24330 5' -56 NC_005263.2 + 28825 0.75 0.201576
Target:  5'- cCGUGAcGCGCA-CGCGGCGCUCcuGGAa -3'
miRNA:   3'- -GCGCUuCGUGUaGCGCCGCGAG--CUUa -5'
24330 5' -56 NC_005263.2 + 21188 0.75 0.201576
Target:  5'- aCGCGGA-CGCG-CGCGGCGCgggCGAGUg -3'
miRNA:   3'- -GCGCUUcGUGUaGCGCCGCGa--GCUUA- -5'
24330 5' -56 NC_005263.2 + 37852 0.74 0.224385
Target:  5'- uGCGAAGCGCAUCGCGa---UCGAGUa -3'
miRNA:   3'- gCGCUUCGUGUAGCGCcgcgAGCUUA- -5'
24330 5' -56 NC_005263.2 + 32593 0.73 0.2429
Target:  5'- gCGCGAugAGCACAUCGCcGaGCGuCUUGAGc -3'
miRNA:   3'- -GCGCU--UCGUGUAGCG-C-CGC-GAGCUUa -5'
24330 5' -56 NC_005263.2 + 26351 0.73 0.247399
Target:  5'- uGCGGAGCAUuagugcgacccauuAUCGCGaCGCUCGAc- -3'
miRNA:   3'- gCGCUUCGUG--------------UAGCGCcGCGAGCUua -5'
24330 5' -56 NC_005263.2 + 17297 0.73 0.249349
Target:  5'- gCGCGAGGCA-GUCGCcacGGCGCgCGAAUu -3'
miRNA:   3'- -GCGCUUCGUgUAGCG---CCGCGaGCUUA- -5'
24330 5' -56 NC_005263.2 + 2638 0.73 0.262669
Target:  5'- uCGCGAucGGCACGuUCGCGccGgGCUCGAGg -3'
miRNA:   3'- -GCGCU--UCGUGU-AGCGC--CgCGAGCUUa -5'
24330 5' -56 NC_005263.2 + 42757 0.72 0.276563
Target:  5'- aCGCGAuacGGCACGugguuUCGCGGUGCU-GAAc -3'
miRNA:   3'- -GCGCU---UCGUGU-----AGCGCCGCGAgCUUa -5'
24330 5' -56 NC_005263.2 + 17188 0.72 0.291036
Target:  5'- uCGCGgcGUACgccGUCGCcGCGCUCGAc- -3'
miRNA:   3'- -GCGCuuCGUG---UAGCGcCGCGAGCUua -5'
24330 5' -56 NC_005263.2 + 9194 0.72 0.298493
Target:  5'- aCGCGGGuGCGCAaacggGCGGCGCUCGu-- -3'
miRNA:   3'- -GCGCUU-CGUGUag---CGCCGCGAGCuua -5'
24330 5' -56 NC_005263.2 + 24096 0.72 0.298493
Target:  5'- gCGCGucGGCACuuugcagCGCGGCGCcuuUCGggUa -3'
miRNA:   3'- -GCGCu-UCGUGua-----GCGCCGCG---AGCuuA- -5'
24330 5' -56 NC_005263.2 + 19742 0.72 0.298493
Target:  5'- uGCGAucggcgcuGGCGCGcUgGCGGCGCUCGu-- -3'
miRNA:   3'- gCGCU--------UCGUGU-AgCGCCGCGAGCuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.