Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24330 | 5' | -56 | NC_005263.2 | + | 47510 | 1.06 | 0.001027 |
Target: 5'- gCGCGAAGCACAUCGCGGCGCUCGAAUa -3' miRNA: 3'- -GCGCUUCGUGUAGCGCCGCGAGCUUA- -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 29057 | 0.7 | 0.363449 |
Target: 5'- cCGCGcGGCGCGUCcucgggGCGGCGCgcaUCGGc- -3' miRNA: 3'- -GCGCuUCGUGUAG------CGCCGCG---AGCUua -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 39974 | 0.7 | 0.372227 |
Target: 5'- gGCGAAGCG-AUCGagcaaGCGCUCGAAg -3' miRNA: 3'- gCGCUUCGUgUAGCgc---CGCGAGCUUa -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 6584 | 0.66 | 0.637144 |
Target: 5'- uGCGcAGGCGCAaguagucgacgcgaUCGCGuucggcggcGCGCUCGGc- -3' miRNA: 3'- gCGC-UUCGUGU--------------AGCGC---------CGCGAGCUua -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 41379 | 0.75 | 0.196197 |
Target: 5'- gCGCGAGuguGUACGU-GUGGCGCUCGAGc -3' miRNA: 3'- -GCGCUU---CGUGUAgCGCCGCGAGCUUa -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 20778 | 0.75 | 0.196197 |
Target: 5'- cCGCGccGCugAUCGuCGGCGCgUCGggUc -3' miRNA: 3'- -GCGCuuCGugUAGC-GCCGCG-AGCuuA- -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 28825 | 0.75 | 0.201576 |
Target: 5'- cCGUGAcGCGCA-CGCGGCGCUCcuGGAa -3' miRNA: 3'- -GCGCUuCGUGUaGCGCCGCGAG--CUUa -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 37852 | 0.74 | 0.224385 |
Target: 5'- uGCGAAGCGCAUCGCGa---UCGAGUa -3' miRNA: 3'- gCGCUUCGUGUAGCGCcgcgAGCUUA- -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 17188 | 0.72 | 0.291036 |
Target: 5'- uCGCGgcGUACgccGUCGCcGCGCUCGAc- -3' miRNA: 3'- -GCGCuuCGUG---UAGCGcCGCGAGCUua -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 22108 | 0.71 | 0.352254 |
Target: 5'- gGCGAAGUGCcgCGCGaguggcagcugaaaGCGUUCGAGg -3' miRNA: 3'- gCGCUUCGUGuaGCGC--------------CGCGAGCUUa -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 24096 | 0.72 | 0.298493 |
Target: 5'- gCGCGucGGCACuuugcagCGCGGCGCcuuUCGggUa -3' miRNA: 3'- -GCGCu-UCGUGua-----GCGCCGCG---AGCuuA- -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 42757 | 0.72 | 0.276563 |
Target: 5'- aCGCGAuacGGCACGugguuUCGCGGUGCU-GAAc -3' miRNA: 3'- -GCGCU---UCGUGU-----AGCGCCGCGAgCUUa -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 33992 | 0.79 | 0.105222 |
Target: 5'- gGCGAGGCcggccguguuggcuGCGUCGCGGCGCgCGAu- -3' miRNA: 3'- gCGCUUCG--------------UGUAGCGCCGCGaGCUua -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 47662 | 0.71 | 0.313848 |
Target: 5'- aGCGggGCucuauuACGUCGCGGCGaucCUCGu-- -3' miRNA: 3'- gCGCuuCG------UGUAGCGCCGC---GAGCuua -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 19122 | 0.76 | 0.16196 |
Target: 5'- cCGCGccGAGCGCAUCGCcgGGCGCUUGc-- -3' miRNA: 3'- -GCGC--UUCGUGUAGCG--CCGCGAGCuua -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 32593 | 0.73 | 0.2429 |
Target: 5'- gCGCGAugAGCACAUCGCcGaGCGuCUUGAGc -3' miRNA: 3'- -GCGCU--UCGUGUAGCG-C-CGC-GAGCUUa -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 9538 | 0.71 | 0.346328 |
Target: 5'- gCGCGGcAGCGaccgaCGCGGCGCUCGc-- -3' miRNA: 3'- -GCGCU-UCGUgua--GCGCCGCGAGCuua -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 45924 | 0.7 | 0.366943 |
Target: 5'- gGCGAccgaaggcugGGCGCGucUCGCgccggaucagcgccaGGCGCUCGAAg -3' miRNA: 3'- gCGCU----------UCGUGU--AGCG---------------CCGCGAGCUUa -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 31025 | 0.75 | 0.180809 |
Target: 5'- gGCGAGGCGCggCGUGcGCuGCUCGAGc -3' miRNA: 3'- gCGCUUCGUGuaGCGC-CG-CGAGCUUa -5' |
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24330 | 5' | -56 | NC_005263.2 | + | 21188 | 0.75 | 0.201576 |
Target: 5'- aCGCGGA-CGCG-CGCGGCGCgggCGAGUg -3' miRNA: 3'- -GCGCUUcGUGUaGCGCCGCGa--GCUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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