miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24330 5' -56 NC_005263.2 + 952 0.66 0.640485
Target:  5'- cCGCGAgcGGCgACGUaGCGGCGgUCGc-- -3'
miRNA:   3'- -GCGCU--UCG-UGUAgCGCCGCgAGCuua -5'
24330 5' -56 NC_005263.2 + 1444 0.81 0.068762
Target:  5'- gCGCGAGGCu--UCGCGGCGCUCGc-- -3'
miRNA:   3'- -GCGCUUCGuguAGCGCCGCGAGCuua -5'
24330 5' -56 NC_005263.2 + 1484 0.67 0.530344
Target:  5'- aGC-AGGCGC-UCGCGGCaCUCGGu- -3'
miRNA:   3'- gCGcUUCGUGuAGCGCCGcGAGCUua -5'
24330 5' -56 NC_005263.2 + 2337 0.67 0.530344
Target:  5'- aCGCG-AGCACcgUGCGGCcguugcgcaGCUgGAAg -3'
miRNA:   3'- -GCGCuUCGUGuaGCGCCG---------CGAgCUUa -5'
24330 5' -56 NC_005263.2 + 2433 0.66 0.629347
Target:  5'- uCGaCGAguuguuucuGGCGCAaCGCGGCcaGCUCGGc- -3'
miRNA:   3'- -GC-GCU---------UCGUGUaGCGCCG--CGAGCUua -5'
24330 5' -56 NC_005263.2 + 2638 0.73 0.262669
Target:  5'- uCGCGAucGGCACGuUCGCGccGgGCUCGAGg -3'
miRNA:   3'- -GCGCU--UCGUGU-AGCGC--CgCGAGCUUa -5'
24330 5' -56 NC_005263.2 + 2683 0.66 0.584919
Target:  5'- uGUGGuAGCugAUcgCGCGGCcGCUCGGc- -3'
miRNA:   3'- gCGCU-UCGugUA--GCGCCG-CGAGCUua -5'
24330 5' -56 NC_005263.2 + 6000 0.7 0.381147
Target:  5'- uCGCGAAGCGCAgcaccgaaCGCGGauaaCGUUCGGu- -3'
miRNA:   3'- -GCGCUUCGUGUa-------GCGCC----GCGAGCUua -5'
24330 5' -56 NC_005263.2 + 6584 0.66 0.637144
Target:  5'- uGCGcAGGCGCAaguagucgacgcgaUCGCGuucggcggcGCGCUCGGc- -3'
miRNA:   3'- gCGC-UUCGUGU--------------AGCGC---------CGCGAGCUua -5'
24330 5' -56 NC_005263.2 + 7227 0.66 0.618212
Target:  5'- gGCGAcGGCGCcaUGCGGUGCacgCGAGg -3'
miRNA:   3'- gCGCU-UCGUGuaGCGCCGCGa--GCUUa -5'
24330 5' -56 NC_005263.2 + 8035 0.7 0.399412
Target:  5'- uGCGAGGCguccGCGcCGUGGCGCcgcgCGAGUu -3'
miRNA:   3'- gCGCUUCG----UGUaGCGCCGCGa---GCUUA- -5'
24330 5' -56 NC_005263.2 + 8840 0.68 0.519638
Target:  5'- uGCGAucaaGCAUCGCGcGCaGCUCGGc- -3'
miRNA:   3'- gCGCUucg-UGUAGCGC-CG-CGAGCUua -5'
24330 5' -56 NC_005263.2 + 9182 0.66 0.595988
Target:  5'- gCGCGAcgucgAGCuCggCGCGGCGCcCGGc- -3'
miRNA:   3'- -GCGCU-----UCGuGuaGCGCCGCGaGCUua -5'
24330 5' -56 NC_005263.2 + 9194 0.72 0.298493
Target:  5'- aCGCGGGuGCGCAaacggGCGGCGCUCGu-- -3'
miRNA:   3'- -GCGCUU-CGUGUag---CGCCGCGAGCuua -5'
24330 5' -56 NC_005263.2 + 9455 0.66 0.607089
Target:  5'- gGCGAGGUugGCGUCGauGCGCgacgCGGc- -3'
miRNA:   3'- gCGCUUCG--UGUAGCgcCGCGa---GCUua -5'
24330 5' -56 NC_005263.2 + 9538 0.71 0.346328
Target:  5'- gCGCGGcAGCGaccgaCGCGGCGCUCGc-- -3'
miRNA:   3'- -GCGCU-UCGUgua--GCGCCGCGAGCuua -5'
24330 5' -56 NC_005263.2 + 9775 0.7 0.372227
Target:  5'- cCGCGu-GCACgGUCGCGcGCGCaUCGAu- -3'
miRNA:   3'- -GCGCuuCGUG-UAGCGC-CGCG-AGCUua -5'
24330 5' -56 NC_005263.2 + 10197 0.69 0.427833
Target:  5'- gGcCGAAGCGC-UCGcCGGCcucggGCUCGAGUc -3'
miRNA:   3'- gC-GCUUCGUGuAGC-GCCG-----CGAGCUUA- -5'
24330 5' -56 NC_005263.2 + 10712 0.7 0.398485
Target:  5'- aCGCGAuGCACGUCGCgcagccagGGCGacgcagaCUCGAGc -3'
miRNA:   3'- -GCGCUuCGUGUAGCG--------CCGC-------GAGCUUa -5'
24330 5' -56 NC_005263.2 + 10854 0.67 0.530344
Target:  5'- uGCG-GGCuacgGCGUCGCGGCGgaaCUCGGc- -3'
miRNA:   3'- gCGCuUCG----UGUAGCGCCGC---GAGCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.