Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24331 | 5' | -58.5 | NC_005264.1 | + | 52425 | 0.69 | 0.678196 |
|
Target: 5'- gACCUGGCCGagaagUACUGGcucgAGC-CUGCCGa -3' miRNA: 3'- gUGGGUCGGC-----AUGACC----UCGcGAUGGC- -5' |
|||||||
| 24331 | 5' | -58.5 | NC_005264.1 | + | 48377 | 0.7 | 0.588118 |
|
Target: 5'- gGCgCAGCCGguagACUGGGGCGUcgGgCGg -3' miRNA: 3'- gUGgGUCGGCa---UGACCUCGCGa-UgGC- -5' |
|||||||
| 24331 | 5' | -58.5 | NC_005264.1 | + | 44631 | 0.67 | 0.792546 |
|
Target: 5'- uCACCgCGGCCGag--GGAGUGCUgauguagaagcuGCCGu -3' miRNA: 3'- -GUGG-GUCGGCaugaCCUCGCGA------------UGGC- -5' |
|||||||
| 24331 | 5' | -58.5 | NC_005264.1 | + | 42937 | 0.73 | 0.427593 |
|
Target: 5'- aCACCCAGUCGUACguccGGGCGCggcaacGCCu -3' miRNA: 3'- -GUGGGUCGGCAUGac--CUCGCGa-----UGGc -5' |
|||||||
| 24331 | 5' | -58.5 | NC_005264.1 | + | 29118 | 0.72 | 0.463247 |
|
Target: 5'- aACCCcccgaGGCUGUACcugaGGAGCGCgugGCCGc -3' miRNA: 3'- gUGGG-----UCGGCAUGa---CCUCGCGa--UGGC- -5' |
|||||||
| 24331 | 5' | -58.5 | NC_005264.1 | + | 24949 | 0.66 | 0.810057 |
|
Target: 5'- gCACaUguGCCGUACcaGGGCGCUgcGCCGa -3' miRNA: 3'- -GUG-GguCGGCAUGacCUCGCGA--UGGC- -5' |
|||||||
| 24331 | 5' | -58.5 | NC_005264.1 | + | 12531 | 0.68 | 0.727325 |
|
Target: 5'- gCAUCUAGCCGguaggaGCggGGGGCGUUcGCCGc -3' miRNA: 3'- -GUGGGUCGGCa-----UGa-CCUCGCGA-UGGC- -5' |
|||||||
| 24331 | 5' | -58.5 | NC_005264.1 | + | 799 | 0.68 | 0.736949 |
|
Target: 5'- gCGCuCCAGUacgGCUGGGuGCGCgGCCGg -3' miRNA: 3'- -GUG-GGUCGgcaUGACCU-CGCGaUGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home