Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24331 | 5' | -58.5 | NC_005264.1 | + | 162044 | 1.07 | 0.002382 |
Target: 5'- gCACCCAGCCGUACUGGAGCGCUACCGc -3' miRNA: 3'- -GUGGGUCGGCAUGACCUCGCGAUGGC- -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 55935 | 0.76 | 0.302747 |
Target: 5'- gACCCGGCUucugGaACUGGGuGCGCUACCGc -3' miRNA: 3'- gUGGGUCGG----CaUGACCU-CGCGAUGGC- -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 88585 | 0.76 | 0.302747 |
Target: 5'- cCGCCUcuaccGCCGUGuCUGGAGCGCgGCCa -3' miRNA: 3'- -GUGGGu----CGGCAU-GACCUCGCGaUGGc -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 42937 | 0.73 | 0.427593 |
Target: 5'- aCACCCAGUCGUACguccGGGCGCggcaacGCCu -3' miRNA: 3'- -GUGGGUCGGCAUGac--CUCGCGa-----UGGc -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 161964 | 0.73 | 0.427593 |
Target: 5'- aCACCCAGUCGUACguccGGGCGCggcaacGCCu -3' miRNA: 3'- -GUGGGUCGGCAUGac--CUCGCGa-----UGGc -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 29118 | 0.72 | 0.463247 |
Target: 5'- aACCCcccgaGGCUGUACcugaGGAGCGCgugGCCGc -3' miRNA: 3'- gUGGG-----UCGGCAUGa---CCUCGCGa--UGGC- -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 101586 | 0.72 | 0.490982 |
Target: 5'- aCGCCgAggcgcGCCGUgaGCUGGAGCGC-GCCa -3' miRNA: 3'- -GUGGgU-----CGGCA--UGACCUCGCGaUGGc -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 75106 | 0.71 | 0.55839 |
Target: 5'- gCGCCgGcGCCGaGCUGGGGCGCagucaaaugGCCGc -3' miRNA: 3'- -GUGGgU-CGGCaUGACCUCGCGa--------UGGC- -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 48377 | 0.7 | 0.588118 |
Target: 5'- gGCgCAGCCGguagACUGGGGCGUcgGgCGg -3' miRNA: 3'- gUGgGUCGGCa---UGACCUCGCGa-UgGC- -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 95434 | 0.69 | 0.648214 |
Target: 5'- aACCCAaaGCCGUcgUGGAauaCGCUACCGc -3' miRNA: 3'- gUGGGU--CGGCAugACCUc--GCGAUGGC- -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 52425 | 0.69 | 0.678196 |
Target: 5'- gACCUGGCCGagaagUACUGGcucgAGC-CUGCCGa -3' miRNA: 3'- gUGGGUCGGC-----AUGACC----UCGcGAUGGC- -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 98669 | 0.68 | 0.717623 |
Target: 5'- gACCCAGU---GCUGGcGGCGCUugCa -3' miRNA: 3'- gUGGGUCGgcaUGACC-UCGCGAugGc -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 131558 | 0.68 | 0.727325 |
Target: 5'- gCAUCUAGCCGguaggaGCggGGGGCGUUcGCCGc -3' miRNA: 3'- -GUGGGUCGGCa-----UGa-CCUCGCGA-UGGC- -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 12531 | 0.68 | 0.727325 |
Target: 5'- gCAUCUAGCCGguaggaGCggGGGGCGUUcGCCGc -3' miRNA: 3'- -GUGGGUCGGCa-----UGa-CCUCGCGA-UGGC- -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 799 | 0.68 | 0.736949 |
Target: 5'- gCGCuCCAGUacgGCUGGGuGCGCgGCCGg -3' miRNA: 3'- -GUG-GGUCGgcaUGACCU-CGCGaUGGC- -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 98980 | 0.67 | 0.746485 |
Target: 5'- ---aCGGCCGUugUGGAGCG--GCCu -3' miRNA: 3'- guggGUCGGCAugACCUCGCgaUGGc -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 70385 | 0.67 | 0.783578 |
Target: 5'- gGCUCGGUgGaGCUGGAGgGCgGCCu -3' miRNA: 3'- gUGGGUCGgCaUGACCUCgCGaUGGc -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 104939 | 0.67 | 0.783578 |
Target: 5'- -cCCCAGCCGUGCca-AGCGCcgaGCCu -3' miRNA: 3'- guGGGUCGGCAUGaccUCGCGa--UGGc -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 99771 | 0.67 | 0.783578 |
Target: 5'- gGCCCucGCCGaGCUGGAGaccgagaucaaGCgGCCGa -3' miRNA: 3'- gUGGGu-CGGCaUGACCUCg----------CGaUGGC- -5' |
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24331 | 5' | -58.5 | NC_005264.1 | + | 44631 | 0.67 | 0.792546 |
Target: 5'- uCACCgCGGCCGag--GGAGUGCUgauguagaagcuGCCGu -3' miRNA: 3'- -GUGG-GUCGGCaugaCCUCGCGA------------UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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