miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24331 5' -58.5 NC_005264.1 + 55935 0.76 0.302747
Target:  5'- gACCCGGCUucugGaACUGGGuGCGCUACCGc -3'
miRNA:   3'- gUGGGUCGG----CaUGACCU-CGCGAUGGC- -5'
24331 5' -58.5 NC_005264.1 + 98472 0.66 0.83514
Target:  5'- aACCCGGCCGgcacGCgcgagGGcaucuccucAGCGCUACa- -3'
miRNA:   3'- gUGGGUCGGCa---UGa----CC---------UCGCGAUGgc -5'
24331 5' -58.5 NC_005264.1 + 76693 0.66 0.83514
Target:  5'- uGCCCAGCUugGCgcGGAGCGCgGCg- -3'
miRNA:   3'- gUGGGUCGGcaUGa-CCUCGCGaUGgc -5'
24331 5' -58.5 NC_005264.1 + 66067 0.66 0.810057
Target:  5'- aGCCCGGgaauaaguuucUCGUAgucuCUGGGGgGCUGCCc -3'
miRNA:   3'- gUGGGUC-----------GGCAU----GACCUCgCGAUGGc -5'
24331 5' -58.5 NC_005264.1 + 77970 0.67 0.792546
Target:  5'- cCugCCGGCgccgcgCGUACcGGAGCGggcgaUACCGa -3'
miRNA:   3'- -GugGGUCG------GCAUGaCCUCGCg----AUGGC- -5'
24331 5' -58.5 NC_005264.1 + 55135 0.67 0.792546
Target:  5'- aCACCCcGCCGUGCgcu-GUGCUGgCGc -3'
miRNA:   3'- -GUGGGuCGGCAUGaccuCGCGAUgGC- -5'
24331 5' -58.5 NC_005264.1 + 44631 0.67 0.792546
Target:  5'- uCACCgCGGCCGag--GGAGUGCUgauguagaagcuGCCGu -3'
miRNA:   3'- -GUGG-GUCGGCaugaCCUCGCGA------------UGGC- -5'
24331 5' -58.5 NC_005264.1 + 70385 0.67 0.783578
Target:  5'- gGCUCGGUgGaGCUGGAGgGCgGCCu -3'
miRNA:   3'- gUGGGUCGgCaUGACCUCgCGaUGGc -5'
24331 5' -58.5 NC_005264.1 + 799 0.68 0.736949
Target:  5'- gCGCuCCAGUacgGCUGGGuGCGCgGCCGg -3'
miRNA:   3'- -GUG-GGUCGgcaUGACCU-CGCGaUGGC- -5'
24331 5' -58.5 NC_005264.1 + 131558 0.68 0.727325
Target:  5'- gCAUCUAGCCGguaggaGCggGGGGCGUUcGCCGc -3'
miRNA:   3'- -GUGGGUCGGCa-----UGa-CCUCGCGA-UGGC- -5'
24331 5' -58.5 NC_005264.1 + 75106 0.71 0.55839
Target:  5'- gCGCCgGcGCCGaGCUGGGGCGCagucaaaugGCCGc -3'
miRNA:   3'- -GUGGgU-CGGCaUGACCUCGCGa--------UGGC- -5'
24331 5' -58.5 NC_005264.1 + 29118 0.72 0.463247
Target:  5'- aACCCcccgaGGCUGUACcugaGGAGCGCgugGCCGc -3'
miRNA:   3'- gUGGG-----UCGGCAUGa---CCUCGCGa--UGGC- -5'
24331 5' -58.5 NC_005264.1 + 161964 0.73 0.427593
Target:  5'- aCACCCAGUCGUACguccGGGCGCggcaacGCCu -3'
miRNA:   3'- -GUGGGUCGGCAUGac--CUCGCGa-----UGGc -5'
24331 5' -58.5 NC_005264.1 + 88585 0.76 0.302747
Target:  5'- cCGCCUcuaccGCCGUGuCUGGAGCGCgGCCa -3'
miRNA:   3'- -GUGGGu----CGGCAU-GACCUCGCGaUGGc -5'
24331 5' -58.5 NC_005264.1 + 98980 0.67 0.746485
Target:  5'- ---aCGGCCGUugUGGAGCG--GCCu -3'
miRNA:   3'- guggGUCGGCAugACCUCGCgaUGGc -5'
24331 5' -58.5 NC_005264.1 + 99771 0.67 0.783578
Target:  5'- gGCCCucGCCGaGCUGGAGaccgagaucaaGCgGCCGa -3'
miRNA:   3'- gUGGGu-CGGCaUGACCUCg----------CGaUGGC- -5'
24331 5' -58.5 NC_005264.1 + 104939 0.67 0.783578
Target:  5'- -cCCCAGCCGUGCca-AGCGCcgaGCCu -3'
miRNA:   3'- guGGGUCGGCAUGaccUCGCGa--UGGc -5'
24331 5' -58.5 NC_005264.1 + 24949 0.66 0.810057
Target:  5'- gCACaUguGCCGUACcaGGGCGCUgcGCCGa -3'
miRNA:   3'- -GUG-GguCGGCAUGacCUCGCGA--UGGC- -5'
24331 5' -58.5 NC_005264.1 + 157569 0.66 0.810057
Target:  5'- aCGCCacgaGGCCGgGCUuGGGCGCUuccCCGu -3'
miRNA:   3'- -GUGGg---UCGGCaUGAcCUCGCGAu--GGC- -5'
24331 5' -58.5 NC_005264.1 + 162044 1.07 0.002382
Target:  5'- gCACCCAGCCGUACUGGAGCGCUACCGc -3'
miRNA:   3'- -GUGGGUCGGCAUGACCUCGCGAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.