miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24332 3' -48.4 NC_005264.1 + 162318 0.69 0.993365
Target:  5'- gGGUgCUCgGCGGCCCCAu-AAGUAuCAa -3'
miRNA:   3'- -CCA-GGGaCGUCGGGGUuuUUUAUuGU- -5'
24332 3' -48.4 NC_005264.1 + 161311 0.67 0.998551
Target:  5'- cGGUCaacgCCgcGgGGCCCCAAAAAAcGGCGc -3'
miRNA:   3'- -CCAG----GGa-CgUCGGGGUUUUUUaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 161274 1.13 0.009179
Target:  5'- aGGUCCCUGCAGCCCCAAAAAAUAACAa -3'
miRNA:   3'- -CCAGGGACGUCGGGGUUUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 159006 0.68 0.995105
Target:  5'- cGGUCguauuuccuCCUGCGGCCCCGc--------- -3'
miRNA:   3'- -CCAG---------GGACGUCGGGGUuuuuuauugu -5'
24332 3' -48.4 NC_005264.1 + 157733 0.66 0.99936
Target:  5'- aGGUCCCaGCucGCCCCcAGGcGUAGa- -3'
miRNA:   3'- -CCAGGGaCGu-CGGGGuUUUuUAUUgu -5'
24332 3' -48.4 NC_005264.1 + 154836 0.67 0.997482
Target:  5'- cGGgcgCCuCUGcCGGCCCCGc--AAUGGCGg -3'
miRNA:   3'- -CCa--GG-GAC-GUCGGGGUuuuUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 144852 0.71 0.97049
Target:  5'- aGUCCCUGgGGCCUaGGGGAAUAAa- -3'
miRNA:   3'- cCAGGGACgUCGGGgUUUUUUAUUgu -5'
24332 3' -48.4 NC_005264.1 + 143582 0.67 0.998215
Target:  5'- cGUCCCcGgGGCCCgGagggaacGAGAAUGGCGc -3'
miRNA:   3'- cCAGGGaCgUCGGGgU-------UUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 129203 0.71 0.973438
Target:  5'- uGGUCCCaGCccucGUCCCAGAGA--AACAa -3'
miRNA:   3'- -CCAGGGaCGu---CGGGGUUUUUuaUUGU- -5'
24332 3' -48.4 NC_005264.1 + 124380 0.69 0.989863
Target:  5'- cGUCCCggGCGGCCUCGc-GGAUGAUu -3'
miRNA:   3'- cCAGGGa-CGUCGGGGUuuUUUAUUGu -5'
24332 3' -48.4 NC_005264.1 + 120607 0.66 0.99936
Target:  5'- uGUCCCUGCcgcuguuuAGCcgccucggaaaCCCGGAAAAggcgGACAc -3'
miRNA:   3'- cCAGGGACG--------UCG-----------GGGUUUUUUa---UUGU- -5'
24332 3' -48.4 NC_005264.1 + 120539 0.7 0.980998
Target:  5'- cGGcagCCCUGCgacGGCCCCGGAAGc----- -3'
miRNA:   3'- -CCa--GGGACG---UCGGGGUUUUUuauugu -5'
24332 3' -48.4 NC_005264.1 + 118992 0.66 0.999486
Target:  5'- -uUCCCcgcgGCAGCCCCcuucuuuAUAACc -3'
miRNA:   3'- ccAGGGa---CGUCGGGGuuuuu--UAUUGu -5'
24332 3' -48.4 NC_005264.1 + 116709 0.66 0.999025
Target:  5'- aGGguugCCCUGUAGCgCCAAuaccAGUAuucuGCAg -3'
miRNA:   3'- -CCa---GGGACGUCGgGGUUuu--UUAU----UGU- -5'
24332 3' -48.4 NC_005264.1 + 115301 0.69 0.993365
Target:  5'- cGUCCCgcGCAGCCCUuccuGAcgAGCu -3'
miRNA:   3'- cCAGGGa-CGUCGGGGuuu-UUuaUUGu -5'
24332 3' -48.4 NC_005264.1 + 114471 0.66 0.999156
Target:  5'- aGUCUaccggCUGC-GCCCCAAAauaaacuugcuuacGAAUGACAc -3'
miRNA:   3'- cCAGG-----GACGuCGGGGUUU--------------UUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 109917 0.68 0.996455
Target:  5'- cGG-CCaUGCAauGCCCCucGAAGUGGCGg -3'
miRNA:   3'- -CCaGGgACGU--CGGGGuuUUUUAUUGU- -5'
24332 3' -48.4 NC_005264.1 + 109645 0.67 0.998551
Target:  5'- cGGUUgcaaCUcGCGGCCCCGGAGAcucGACGu -3'
miRNA:   3'- -CCAGg---GA-CGUCGGGGUUUUUua-UUGU- -5'
24332 3' -48.4 NC_005264.1 + 104169 0.76 0.815094
Target:  5'- gGGUgCgCCUGCAGCgCCGGAGAAUggUAu -3'
miRNA:   3'- -CCA-G-GGACGUCGgGGUUUUUUAuuGU- -5'
24332 3' -48.4 NC_005264.1 + 100455 0.66 0.999025
Target:  5'- --aCUCUGC-GCUCCGGAGAGUAcGCAa -3'
miRNA:   3'- ccaGGGACGuCGGGGUUUUUUAU-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.