Results 1 - 20 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 162318 | 0.69 | 0.993365 |
Target: 5'- gGGUgCUCgGCGGCCCCAu-AAGUAuCAa -3' miRNA: 3'- -CCA-GGGaCGUCGGGGUuuUUUAUuGU- -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 161311 | 0.67 | 0.998551 |
Target: 5'- cGGUCaacgCCgcGgGGCCCCAAAAAAcGGCGc -3' miRNA: 3'- -CCAG----GGa-CgUCGGGGUUUUUUaUUGU- -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 161274 | 1.13 | 0.009179 |
Target: 5'- aGGUCCCUGCAGCCCCAAAAAAUAACAa -3' miRNA: 3'- -CCAGGGACGUCGGGGUUUUUUAUUGU- -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 159006 | 0.68 | 0.995105 |
Target: 5'- cGGUCguauuuccuCCUGCGGCCCCGc--------- -3' miRNA: 3'- -CCAG---------GGACGUCGGGGUuuuuuauugu -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 157733 | 0.66 | 0.99936 |
Target: 5'- aGGUCCCaGCucGCCCCcAGGcGUAGa- -3' miRNA: 3'- -CCAGGGaCGu-CGGGGuUUUuUAUUgu -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 154836 | 0.67 | 0.997482 |
Target: 5'- cGGgcgCCuCUGcCGGCCCCGc--AAUGGCGg -3' miRNA: 3'- -CCa--GG-GAC-GUCGGGGUuuuUUAUUGU- -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 144852 | 0.71 | 0.97049 |
Target: 5'- aGUCCCUGgGGCCUaGGGGAAUAAa- -3' miRNA: 3'- cCAGGGACgUCGGGgUUUUUUAUUgu -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 143582 | 0.67 | 0.998215 |
Target: 5'- cGUCCCcGgGGCCCgGagggaacGAGAAUGGCGc -3' miRNA: 3'- cCAGGGaCgUCGGGgU-------UUUUUAUUGU- -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 129203 | 0.71 | 0.973438 |
Target: 5'- uGGUCCCaGCccucGUCCCAGAGA--AACAa -3' miRNA: 3'- -CCAGGGaCGu---CGGGGUUUUUuaUUGU- -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 124380 | 0.69 | 0.989863 |
Target: 5'- cGUCCCggGCGGCCUCGc-GGAUGAUu -3' miRNA: 3'- cCAGGGa-CGUCGGGGUuuUUUAUUGu -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 120607 | 0.66 | 0.99936 |
Target: 5'- uGUCCCUGCcgcuguuuAGCcgccucggaaaCCCGGAAAAggcgGACAc -3' miRNA: 3'- cCAGGGACG--------UCG-----------GGGUUUUUUa---UUGU- -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 120539 | 0.7 | 0.980998 |
Target: 5'- cGGcagCCCUGCgacGGCCCCGGAAGc----- -3' miRNA: 3'- -CCa--GGGACG---UCGGGGUUUUUuauugu -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 118992 | 0.66 | 0.999486 |
Target: 5'- -uUCCCcgcgGCAGCCCCcuucuuuAUAACc -3' miRNA: 3'- ccAGGGa---CGUCGGGGuuuuu--UAUUGu -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 116709 | 0.66 | 0.999025 |
Target: 5'- aGGguugCCCUGUAGCgCCAAuaccAGUAuucuGCAg -3' miRNA: 3'- -CCa---GGGACGUCGgGGUUuu--UUAU----UGU- -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 115301 | 0.69 | 0.993365 |
Target: 5'- cGUCCCgcGCAGCCCUuccuGAcgAGCu -3' miRNA: 3'- cCAGGGa-CGUCGGGGuuu-UUuaUUGu -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 114471 | 0.66 | 0.999156 |
Target: 5'- aGUCUaccggCUGC-GCCCCAAAauaaacuugcuuacGAAUGACAc -3' miRNA: 3'- cCAGG-----GACGuCGGGGUUU--------------UUUAUUGU- -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 109917 | 0.68 | 0.996455 |
Target: 5'- cGG-CCaUGCAauGCCCCucGAAGUGGCGg -3' miRNA: 3'- -CCaGGgACGU--CGGGGuuUUUUAUUGU- -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 109645 | 0.67 | 0.998551 |
Target: 5'- cGGUUgcaaCUcGCGGCCCCGGAGAcucGACGu -3' miRNA: 3'- -CCAGg---GA-CGUCGGGGUUUUUua-UUGU- -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 104169 | 0.76 | 0.815094 |
Target: 5'- gGGUgCgCCUGCAGCgCCGGAGAAUggUAu -3' miRNA: 3'- -CCA-G-GGACGUCGgGGUUUUUUAuuGU- -5' |
|||||||
24332 | 3' | -48.4 | NC_005264.1 | + | 100455 | 0.66 | 0.999025 |
Target: 5'- --aCUCUGC-GCUCCGGAGAGUAcGCAa -3' miRNA: 3'- ccaGGGACGuCGGGGUUUUUUAU-UGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home