Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24333 | 3' | -57.7 | NC_005264.1 | + | 145700 | 0.67 | 0.728143 |
Target: 5'- uGUAGCCGCCC-CCUCgACgccguaccGCAGAa-- -3' miRNA: 3'- -UAUCGGCGGGuGGGGgUG--------UGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 137472 | 0.67 | 0.757485 |
Target: 5'- cUAGCCGCCCuCCUcgaCCACACGc---- -3' miRNA: 3'- uAUCGGCGGGuGGG---GGUGUGUcuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 131930 | 0.66 | 0.785816 |
Target: 5'- -gAGCCGCCCGgCCUCGCAg------ -3' miRNA: 3'- uaUCGGCGGGUgGGGGUGUgucuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 131298 | 0.77 | 0.231826 |
Target: 5'- aAUGGCCGUCCGCCCCCACcccaACGGc--- -3' miRNA: 3'- -UAUCGGCGGGUGGGGGUG----UGUCuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 131164 | 0.67 | 0.767054 |
Target: 5'- -cAGCCccgccgagaGCCCugCCUCGCGCAGu--- -3' miRNA: 3'- uaUCGG---------CGGGugGGGGUGUGUCuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 130468 | 0.67 | 0.73802 |
Target: 5'- -cGGCCGCCggCAUCCUCGC-CAGAa-- -3' miRNA: 3'- uaUCGGCGG--GUGGGGGUGuGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 128583 | 0.69 | 0.615963 |
Target: 5'- --cGUCGCCCGCgCCUCGCuACAGAa-- -3' miRNA: 3'- uauCGGCGGGUG-GGGGUG-UGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 126187 | 0.67 | 0.747804 |
Target: 5'- -cGGCCagGUCCAUCCgCGCACGGGUc- -3' miRNA: 3'- uaUCGG--CGGGUGGGgGUGUGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 125805 | 0.68 | 0.718181 |
Target: 5'- --uGCCGUgU-CCCCCGCACGGAg-- -3' miRNA: 3'- uauCGGCGgGuGGGGGUGUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 116235 | 0.69 | 0.615963 |
Target: 5'- -gAGCCGUCCuCgCCCCGCAgGGAc-- -3' miRNA: 3'- uaUCGGCGGGuG-GGGGUGUgUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 109514 | 0.68 | 0.715178 |
Target: 5'- -gGGCUGCCCcugcuggccaagcaGCCCCUGgGCAGAc-- -3' miRNA: 3'- uaUCGGCGGG--------------UGGGGGUgUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 108632 | 0.69 | 0.636572 |
Target: 5'- --cGCCGUCCGuauCCCCCGCGCAa---- -3' miRNA: 3'- uauCGGCGGGU---GGGGGUGUGUcuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 106076 | 0.67 | 0.776501 |
Target: 5'- -aGGCgaGCUUACCCCgaGCACAGAUg- -3' miRNA: 3'- uaUCGg-CGGGUGGGGg-UGUGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 104129 | 0.72 | 0.466677 |
Target: 5'- gGUGGCCGCCCGCCUaguaaacgcggCCGuCAUAGAg-- -3' miRNA: 3'- -UAUCGGCGGGUGGG-----------GGU-GUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 97280 | 0.66 | 0.794992 |
Target: 5'- gGUAGUgGCCgCugCCUCGCGCAGc--- -3' miRNA: 3'- -UAUCGgCGG-GugGGGGUGUGUCuaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 95674 | 0.71 | 0.534593 |
Target: 5'- -aGGCCGCcauCCACCCCUucguCACAGGg-- -3' miRNA: 3'- uaUCGGCG---GGUGGGGGu---GUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 94591 | 0.68 | 0.681768 |
Target: 5'- gAUGGCaucgaggaagacaaGCCCGCCgCCgGCGCGGAUa- -3' miRNA: 3'- -UAUCGg-------------CGGGUGG-GGgUGUGUCUAau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 89746 | 0.7 | 0.599507 |
Target: 5'- cGUAGCCGauCCCACCCgucgaaguagagaugCCGCGCGGGc-- -3' miRNA: 3'- -UAUCGGC--GGGUGGG---------------GGUGUGUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 88348 | 0.66 | 0.812888 |
Target: 5'- cUGGCCGCCUuuggcGCUCUCGCAacCAGAa-- -3' miRNA: 3'- uAUCGGCGGG-----UGGGGGUGU--GUCUaau -5' |
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24333 | 3' | -57.7 | NC_005264.1 | + | 86342 | 0.67 | 0.757485 |
Target: 5'- -cGGUCGCCUAuucCCCCCgACAgAGAUg- -3' miRNA: 3'- uaUCGGCGGGU---GGGGG-UGUgUCUAau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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