miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24333 3' -57.7 NC_005264.1 + 145700 0.67 0.728143
Target:  5'- uGUAGCCGCCC-CCUCgACgccguaccGCAGAa-- -3'
miRNA:   3'- -UAUCGGCGGGuGGGGgUG--------UGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 12904 0.66 0.785816
Target:  5'- -gAGCCGCCCGgCCUCGCAg------ -3'
miRNA:   3'- uaUCGGCGGGUgGGGGUGUgucuaau -5'
24333 3' -57.7 NC_005264.1 + 95674 0.71 0.534593
Target:  5'- -aGGCCGCcauCCACCCCUucguCACAGGg-- -3'
miRNA:   3'- uaUCGGCG---GGUGGGGGu---GUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 161828 0.69 0.646876
Target:  5'- -cGGCCccuGCCCcCCCaCCACACGGGc-- -3'
miRNA:   3'- uaUCGG---CGGGuGGG-GGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 125805 0.68 0.718181
Target:  5'- --uGCCGUgU-CCCCCGCACGGAg-- -3'
miRNA:   3'- uauCGGCGgGuGGGGGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 97280 0.66 0.794992
Target:  5'- gGUAGUgGCCgCugCCUCGCGCAGc--- -3'
miRNA:   3'- -UAUCGgCGG-GugGGGGUGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 56154 0.69 0.646876
Target:  5'- uUGGCCGCUuuuuCGCaCUCCGCGCGGAg-- -3'
miRNA:   3'- uAUCGGCGG----GUG-GGGGUGUGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 41037 0.66 0.812888
Target:  5'- -gGGCCGaCCACuCCCCAgACGGu--- -3'
miRNA:   3'- uaUCGGCgGGUG-GGGGUgUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 88348 0.66 0.812888
Target:  5'- cUGGCCGCCUuuggcGCUCUCGCAacCAGAa-- -3'
miRNA:   3'- uAUCGGCGGG-----UGGGGGUGU--GUCUaau -5'
24333 3' -57.7 NC_005264.1 + 39067 0.67 0.747804
Target:  5'- -cGGCgGUCCACCCCCGgACGc---- -3'
miRNA:   3'- uaUCGgCGGGUGGGGGUgUGUcuaau -5'
24333 3' -57.7 NC_005264.1 + 75544 0.68 0.698044
Target:  5'- -gGGCCGCguaCGCUCCCguaACGCGGAUg- -3'
miRNA:   3'- uaUCGGCGg--GUGGGGG---UGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 161060 1.04 0.003328
Target:  5'- cAUAGCCGCCCACCCCCACACAGAUUAu -3'
miRNA:   3'- -UAUCGGCGGGUGGGGGUGUGUCUAAU- -5'
24333 3' -57.7 NC_005264.1 + 146278 0.68 0.69703
Target:  5'- --cGCCGCCCcggcgccGCCCaCCGCGCuGAa-- -3'
miRNA:   3'- uauCGGCGGG-------UGGG-GGUGUGuCUaau -5'
24333 3' -57.7 NC_005264.1 + 108632 0.69 0.636572
Target:  5'- --cGCCGUCCGuauCCCCCGCGCAa---- -3'
miRNA:   3'- uauCGGCGGGU---GGGGGUGUGUcuaau -5'
24333 3' -57.7 NC_005264.1 + 39136 0.7 0.605673
Target:  5'- --cGCCaCUCGCCCCgACGCAGGUa- -3'
miRNA:   3'- uauCGGcGGGUGGGGgUGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 38753 0.72 0.476119
Target:  5'- cUGGCCGCCUugcgACCCCUGC-CAGAa-- -3'
miRNA:   3'- uAUCGGCGGG----UGGGGGUGuGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 11441 0.67 0.73802
Target:  5'- -cGGCCGCCggCAUCCUCGC-CAGAa-- -3'
miRNA:   3'- uaUCGGCGG--GUGGGGGUGuGUCUaau -5'
24333 3' -57.7 NC_005264.1 + 106076 0.67 0.776501
Target:  5'- -aGGCgaGCUUACCCCgaGCACAGAUg- -3'
miRNA:   3'- uaUCGg-CGGGUGGGGg-UGUGUCUAau -5'
24333 3' -57.7 NC_005264.1 + 72132 0.67 0.757485
Target:  5'- --cGCCGCCUGCCggauaCCACACGGu--- -3'
miRNA:   3'- uauCGGCGGGUGGg----GGUGUGUCuaau -5'
24333 3' -57.7 NC_005264.1 + 131930 0.66 0.785816
Target:  5'- -gAGCCGCCCGgCCUCGCAg------ -3'
miRNA:   3'- uaUCGGCGGGUgGGGGUGUgucuaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.