miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24335 5' -58.5 NC_005264.1 + 3768 0.66 0.82801
Target:  5'- --gGGCGCUGcggGCCCuuggucgacCgCCGCCGAu -3'
miRNA:   3'- agaCCGCGACuuaCGGGu--------G-GGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 122794 0.66 0.82801
Target:  5'- --gGGCGCUGcggGCCCuuggucgacCgCCGCCGAu -3'
miRNA:   3'- agaCCGCGACuuaCGGGu--------G-GGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 96377 0.66 0.819639
Target:  5'- gUCUGGcCGCggcGGUGCCaucucCCCAUCGGa -3'
miRNA:   3'- -AGACC-GCGac-UUACGGgu---GGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 138252 0.66 0.819639
Target:  5'- --aGGCGCUGu-UGgUCACCauCGCCGAg -3'
miRNA:   3'- agaCCGCGACuuACgGGUGG--GUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 53990 0.66 0.811103
Target:  5'- cUCUGuuuaagaagucGCGCgUGGAUGCCUACUUGCgCGAc -3'
miRNA:   3'- -AGAC-----------CGCG-ACUUACGGGUGGGUG-GCU- -5'
24335 5' -58.5 NC_005264.1 + 146286 0.66 0.802409
Target:  5'- --cGGCGCc----GCCCACCgCGCUGAa -3'
miRNA:   3'- agaCCGCGacuuaCGGGUGG-GUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 136452 0.66 0.802409
Target:  5'- --gGGCGCUGAG-GCCgCGCUCAgaGAc -3'
miRNA:   3'- agaCCGCGACUUaCGG-GUGGGUggCU- -5'
24335 5' -58.5 NC_005264.1 + 84949 0.66 0.802409
Target:  5'- -gUGGCGCcGggUGCUCGCUUgcgGCCa- -3'
miRNA:   3'- agACCGCGaCuuACGGGUGGG---UGGcu -5'
24335 5' -58.5 NC_005264.1 + 94948 0.67 0.784582
Target:  5'- cUCcgGGCGCUuGGUgGCaCUACCCgACCGAg -3'
miRNA:   3'- -AGa-CCGCGAcUUA-CG-GGUGGG-UGGCU- -5'
24335 5' -58.5 NC_005264.1 + 133745 0.67 0.780951
Target:  5'- --cGGCGCUGGGaGCCUAUacgcagacaucuaCGCCGAg -3'
miRNA:   3'- agaCCGCGACUUaCGGGUGg------------GUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 25010 0.67 0.775465
Target:  5'- cUCaGGCGCUGcAUGCCUcuccugaggcGCCCGgCCa- -3'
miRNA:   3'- -AGaCCGCGACuUACGGG----------UGGGU-GGcu -5'
24335 5' -58.5 NC_005264.1 + 18186 0.67 0.775465
Target:  5'- --cGGCGCaaGAAUGCCgGCUaACCGGu -3'
miRNA:   3'- agaCCGCGa-CUUACGGgUGGgUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 64509 0.67 0.756869
Target:  5'- cCUGgaccGCGCUGuucUGUCCGCgCCGCCGc -3'
miRNA:   3'- aGAC----CGCGACuu-ACGGGUG-GGUGGCu -5'
24335 5' -58.5 NC_005264.1 + 69586 0.67 0.756869
Target:  5'- cCUGGCGCcaccuaGCCCGCUUGCUGGu -3'
miRNA:   3'- aGACCGCGacuua-CGGGUGGGUGGCU- -5'
24335 5' -58.5 NC_005264.1 + 12250 0.67 0.754041
Target:  5'- cUCUGGCGCcuccacgucgggaaUGGccGUCCGCCC-CCa- -3'
miRNA:   3'- -AGACCGCG--------------ACUuaCGGGUGGGuGGcu -5'
24335 5' -58.5 NC_005264.1 + 131277 0.67 0.754041
Target:  5'- cUCUGGCGCcuccacgucgggaaUGGccGUCCGCCC-CCa- -3'
miRNA:   3'- -AGACCGCG--------------ACUuaCGGGUGGGuGGcu -5'
24335 5' -58.5 NC_005264.1 + 91512 0.67 0.747406
Target:  5'- --cGGCGUaGAAUGCCgcgCACUCGCCa- -3'
miRNA:   3'- agaCCGCGaCUUACGG---GUGGGUGGcu -5'
24335 5' -58.5 NC_005264.1 + 41311 0.67 0.737846
Target:  5'- ---cGCGCUGAAgucgcgcgagGCCCGCCgACCa- -3'
miRNA:   3'- agacCGCGACUUa---------CGGGUGGgUGGcu -5'
24335 5' -58.5 NC_005264.1 + 151400 0.67 0.737846
Target:  5'- uUCUGGCGa-GGAUGCCgGCggccggcguCCGCCGc -3'
miRNA:   3'- -AGACCGCgaCUUACGGgUG---------GGUGGCu -5'
24335 5' -58.5 NC_005264.1 + 160338 0.67 0.737846
Target:  5'- ---cGCGCUGAAgucgcgcgagGCCCGCCgACCa- -3'
miRNA:   3'- agacCGCGACUUa---------CGGGUGGgUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.