Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24336 | 3' | -56.7 | NC_005264.1 | + | 66472 | 0.76 | 0.339583 |
Target: 5'- -aCCGCCGCGGCCagACUCaauGCUUGGCGg -3' miRNA: 3'- caGGUGGUGCCGGa-UGAG---UGGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 66830 | 0.67 | 0.843332 |
Target: 5'- -gCCACCuacuucGCGGCCUGCaUCACUcuagaUGAUg -3' miRNA: 3'- caGGUGG------UGCCGGAUG-AGUGG-----ACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 69848 | 0.67 | 0.856736 |
Target: 5'- -cCCGCUACGGCCggUGCUgCGgcgcguggugauccCCUGGCAu -3' miRNA: 3'- caGGUGGUGCCGG--AUGA-GU--------------GGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 73664 | 0.66 | 0.873938 |
Target: 5'- -gCCGCCgggACGacCCUACUUGCCUGGCc -3' miRNA: 3'- caGGUGG---UGCc-GGAUGAGUGGACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 75952 | 0.71 | 0.614415 |
Target: 5'- cUCUAUCGCGGCC-GC-CGCCUGugAg -3' miRNA: 3'- cAGGUGGUGCCGGaUGaGUGGACugU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 82574 | 0.75 | 0.412833 |
Target: 5'- cUCCGCUgaGCGGCCUcGCUCGCCcucaaggcgUGACAa -3' miRNA: 3'- cAGGUGG--UGCCGGA-UGAGUGG---------ACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 83436 | 0.71 | 0.614415 |
Target: 5'- uUCCGCCGCGGCCUcGCcaCGCCcgcGGCGg -3' miRNA: 3'- cAGGUGGUGCCGGA-UGa-GUGGa--CUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 87031 | 0.66 | 0.879659 |
Target: 5'- -aCCACCGCGcGCCUACggacggcgacgACCUGGa- -3' miRNA: 3'- caGGUGGUGC-CGGAUGag---------UGGACUgu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 91738 | 0.66 | 0.881067 |
Target: 5'- -cUCACCAgGGCCgaggGCggCugUUGACAa -3' miRNA: 3'- caGGUGGUgCCGGa---UGa-GugGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 92081 | 0.72 | 0.573854 |
Target: 5'- aUUCACCGCGuuguugccGCUUGCUCGCCUGuACGc -3' miRNA: 3'- cAGGUGGUGC--------CGGAUGAGUGGAC-UGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 93799 | 0.71 | 0.594079 |
Target: 5'- -gCgGCCGCGGCCaagagaucgACUCGCCgUGGCAc -3' miRNA: 3'- caGgUGGUGCCGGa--------UGAGUGG-ACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 98154 | 0.66 | 0.866595 |
Target: 5'- -gCgAgCACGGCCUGCcCGCC-GGCAg -3' miRNA: 3'- caGgUgGUGCCGGAUGaGUGGaCUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 110162 | 0.69 | 0.74499 |
Target: 5'- -cCCGCCGCGGCUUugggGC-CuauCCUGGCAu -3' miRNA: 3'- caGGUGGUGCCGGA----UGaGu--GGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 110719 | 0.66 | 0.894661 |
Target: 5'- cUCCAUCACcggaGGCCUccuGCUCGCUUcGCGg -3' miRNA: 3'- cAGGUGGUG----CCGGA---UGAGUGGAcUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 122636 | 0.66 | 0.894661 |
Target: 5'- -aCCGCCGCggggGGCCgcgaggGCgggCGCgCUGACAu -3' miRNA: 3'- caGGUGGUG----CCGGa-----UGa--GUG-GACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 123347 | 0.77 | 0.310191 |
Target: 5'- cGUCCACCACagcgcaGGCCUGC-C-CCUGGCGg -3' miRNA: 3'- -CAGGUGGUG------CCGGAUGaGuGGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 124184 | 0.71 | 0.594079 |
Target: 5'- -gCCGCCGCGGCCa--UCAUCUcGACGg -3' miRNA: 3'- caGGUGGUGCCGGaugAGUGGA-CUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 124847 | 0.71 | 0.604237 |
Target: 5'- aGUCCGgCGgcggUGGCCgccACUCGCCUGGCc -3' miRNA: 3'- -CAGGUgGU----GCCGGa--UGAGUGGACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 125254 | 0.69 | 0.754599 |
Target: 5'- -cCCGCCGCGGCC-GC-CGCgaGACu -3' miRNA: 3'- caGGUGGUGCCGGaUGaGUGgaCUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 125283 | 0.7 | 0.665351 |
Target: 5'- cUCCGCgGCGGCgCgcugucGCuUCGCCUGACGc -3' miRNA: 3'- cAGGUGgUGCCG-Ga-----UG-AGUGGACUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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