miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24336 3' -56.7 NC_005264.1 + 110162 0.69 0.74499
Target:  5'- -cCCGCCGCGGCUUugggGC-CuauCCUGGCAu -3'
miRNA:   3'- caGGUGGUGCCGGA----UGaGu--GGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 92081 0.72 0.573854
Target:  5'- aUUCACCGCGuuguugccGCUUGCUCGCCUGuACGc -3'
miRNA:   3'- cAGGUGGUGC--------CGGAUGAGUGGAC-UGU- -5'
24336 3' -56.7 NC_005264.1 + 66472 0.76 0.339583
Target:  5'- -aCCGCCGCGGCCagACUCaauGCUUGGCGg -3'
miRNA:   3'- caGGUGGUGCCGGa-UGAG---UGGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 4320 0.77 0.310191
Target:  5'- cGUCCACCACagcgcaGGCCUGC-C-CCUGGCGg -3'
miRNA:   3'- -CAGGUGGUG------CCGGAUGaGuGGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 159245 1.09 0.002596
Target:  5'- cGUCCACCACGGCCUACUCACCUGACAg -3'
miRNA:   3'- -CAGGUGGUGCCGGAUGAGUGGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 124184 0.71 0.594079
Target:  5'- -gCCGCCGCGGCCa--UCAUCUcGACGg -3'
miRNA:   3'- caGGUGGUGCCGGaugAGUGGA-CUGU- -5'
24336 3' -56.7 NC_005264.1 + 145159 0.8 0.222678
Target:  5'- -gCCGCCGCGGCCUcgGCUgCGCCUGAg- -3'
miRNA:   3'- caGGUGGUGCCGGA--UGA-GUGGACUgu -5'
24336 3' -56.7 NC_005264.1 + 157572 0.71 0.594079
Target:  5'- -cCCGCCGucCGGCCgcgACUCGCCUcccGGCGc -3'
miRNA:   3'- caGGUGGU--GCCGGa--UGAGUGGA---CUGU- -5'
24336 3' -56.7 NC_005264.1 + 83436 0.71 0.614415
Target:  5'- uUCCGCCGCGGCCUcGCcaCGCCcgcGGCGg -3'
miRNA:   3'- cAGGUGGUGCCGGA-UGa-GUGGa--CUGU- -5'
24336 3' -56.7 NC_005264.1 + 65456 0.7 0.655184
Target:  5'- -cUCugCACGGCCUGCggGCCUG-CGa -3'
miRNA:   3'- caGGugGUGCCGGAUGagUGGACuGU- -5'
24336 3' -56.7 NC_005264.1 + 61802 0.7 0.695657
Target:  5'- cUCCACCG-GGCCgcggGCaUCGCCgGGCAg -3'
miRNA:   3'- cAGGUGGUgCCGGa---UG-AGUGGaCUGU- -5'
24336 3' -56.7 NC_005264.1 + 125254 0.69 0.754599
Target:  5'- -cCCGCCGCGGCC-GC-CGCgaGACu -3'
miRNA:   3'- caGGUGGUGCCGGaUGaGUGgaCUGu -5'
24336 3' -56.7 NC_005264.1 + 20034 0.66 0.894661
Target:  5'- aGUCCuACCAUGGCCUgGCaugUCGCCacGCGg -3'
miRNA:   3'- -CAGG-UGGUGCCGGA-UG---AGUGGacUGU- -5'
24336 3' -56.7 NC_005264.1 + 122636 0.66 0.894661
Target:  5'- -aCCGCCGCggggGGCCgcgaggGCgggCGCgCUGACAu -3'
miRNA:   3'- caGGUGGUG----CCGGa-----UGa--GUG-GACUGU- -5'
24336 3' -56.7 NC_005264.1 + 144234 0.67 0.851285
Target:  5'- cGUCCGCUGCGGUCUucuccggcugcuACcgCACC-GACAc -3'
miRNA:   3'- -CAGGUGGUGCCGGA------------UGa-GUGGaCUGU- -5'
24336 3' -56.7 NC_005264.1 + 110719 0.66 0.894661
Target:  5'- cUCCAUCACcggaGGCCUccuGCUCGCUUcGCGg -3'
miRNA:   3'- cAGGUGGUG----CCGGA---UGAGUGGAcUGU- -5'
24336 3' -56.7 NC_005264.1 + 3165 0.67 0.835187
Target:  5'- -aCCACCGaacgcguccuUGGCCUugUCaaagaACCUGGCc -3'
miRNA:   3'- caGGUGGU----------GCCGGAugAG-----UGGACUGu -5'
24336 3' -56.7 NC_005264.1 + 62980 0.68 0.800854
Target:  5'- -gCCACCGCGGCUUuggcggACUCcaaggcguGCUUGGCGc -3'
miRNA:   3'- caGGUGGUGCCGGA------UGAG--------UGGACUGU- -5'
24336 3' -56.7 NC_005264.1 + 64441 0.68 0.773486
Target:  5'- cGUCUGCCGCGGCuCUaACUC-CCUGu-- -3'
miRNA:   3'- -CAGGUGGUGCCG-GA-UGAGuGGACugu -5'
24336 3' -56.7 NC_005264.1 + 36731 0.68 0.773486
Target:  5'- -gCCGCCGCGcauuccuugcccGCCUACUgGCCaGACu -3'
miRNA:   3'- caGGUGGUGC------------CGGAUGAgUGGaCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.