Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24336 | 3' | -56.7 | NC_005264.1 | + | 57605 | 0.66 | 0.894661 |
Target: 5'- cGUUUgcuCCGCGGCCUGCUCGCagucGuACAc -3' miRNA: 3'- -CAGGu--GGUGCCGGAUGAGUGga--C-UGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 75952 | 0.71 | 0.614415 |
Target: 5'- cUCUAUCGCGGCC-GC-CGCCUGugAg -3' miRNA: 3'- cAGGUGGUGCCGGaUGaGUGGACugU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 38545 | 0.71 | 0.594079 |
Target: 5'- -cCCGCCGucCGGCCgcgACUCGCCUcccGGCGc -3' miRNA: 3'- caGGUGGU--GCCGGa--UGAGUGGA---CUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 159245 | 1.09 | 0.002596 |
Target: 5'- cGUCCACCACGGCCUACUCACCUGACAg -3' miRNA: 3'- -CAGGUGGUGCCGGAUGAGUGGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 60621 | 0.66 | 0.881067 |
Target: 5'- aGUUCugUGCGGCCcuauCUCGCgaGGCGa -3' miRNA: 3'- -CAGGugGUGCCGGau--GAGUGgaCUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 98154 | 0.66 | 0.866595 |
Target: 5'- -gCgAgCACGGCCUGCcCGCC-GGCAg -3' miRNA: 3'- caGgUgGUGCCGGAUGaGUGGaCUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 20020 | 0.67 | 0.859042 |
Target: 5'- gGUCUACCACGGCgcGCUCGCacccguGCAg -3' miRNA: 3'- -CAGGUGGUGCCGgaUGAGUGgac---UGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 69848 | 0.67 | 0.856736 |
Target: 5'- -cCCGCUACGGCCggUGCUgCGgcgcguggugauccCCUGGCAu -3' miRNA: 3'- caGGUGGUGCCGG--AUGA-GU--------------GGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 26050 | 0.68 | 0.764101 |
Target: 5'- uGUCCGCC-CGGCC-ACgCGCCgaaagGACu -3' miRNA: 3'- -CAGGUGGuGCCGGaUGaGUGGa----CUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 152073 | 0.71 | 0.634804 |
Target: 5'- aGUCCugUcgGCGGUCUGCgcuacCACCUGAUc -3' miRNA: 3'- -CAGGugG--UGCCGGAUGa----GUGGACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 110162 | 0.69 | 0.74499 |
Target: 5'- -cCCGCCGCGGCUUugggGC-CuauCCUGGCAu -3' miRNA: 3'- caGGUGGUGCCGGA----UGaGu--GGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 126412 | 0.67 | 0.818357 |
Target: 5'- cGUCU-CCGCGGCCUGCaggUACUUGGg- -3' miRNA: 3'- -CAGGuGGUGCCGGAUGa--GUGGACUgu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 3609 | 0.66 | 0.894661 |
Target: 5'- -aCCGCCGCggggGGCCgcgaggGCgggCGCgCUGACAu -3' miRNA: 3'- caGGUGGUG----CCGGa-----UGa--GUG-GACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 9877 | 0.69 | 0.715612 |
Target: 5'- gGUCCcggcgcGCCACGGCCUuCcCAgcCCUGGCGg -3' miRNA: 3'- -CAGG------UGGUGCCGGAuGaGU--GGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 12303 | 0.66 | 0.881067 |
Target: 5'- -cCCGCC-CGaGCCUggaGC-CGCCUGACc -3' miRNA: 3'- caGGUGGuGC-CGGA---UGaGUGGACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 66830 | 0.67 | 0.843332 |
Target: 5'- -gCCACCuacuucGCGGCCUGCaUCACUcuagaUGAUg -3' miRNA: 3'- caGGUGG------UGCCGGAUG-AGUGG-----ACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 125283 | 0.7 | 0.665351 |
Target: 5'- cUCCGCgGCGGCgCgcugucGCuUCGCCUGACGc -3' miRNA: 3'- cAGGUGgUGCCG-Ga-----UG-AGUGGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 5821 | 0.71 | 0.604237 |
Target: 5'- aGUCCGgCGgcggUGGCCgccACUCGCCUGGCc -3' miRNA: 3'- -CAGGUgGU----GCCGGa--UGAGUGGACUGu -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 91738 | 0.66 | 0.881067 |
Target: 5'- -cUCACCAgGGCCgaggGCggCugUUGACAa -3' miRNA: 3'- caGGUGGUgCCGGa---UGa-GugGACUGU- -5' |
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24336 | 3' | -56.7 | NC_005264.1 | + | 87031 | 0.66 | 0.879659 |
Target: 5'- -aCCACCGCGcGCCUACggacggcgacgACCUGGa- -3' miRNA: 3'- caGGUGGUGC-CGGAUGag---------UGGACUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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