miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24336 5' -55.9 NC_005264.1 + 159283 1.09 0.003009
Target:  5'- gAUCACCAGGAAAGACGCCACGAGGGGg -3'
miRNA:   3'- -UAGUGGUCCUUUCUGCGGUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 122614 0.8 0.246607
Target:  5'- -aCGCCAGGAggcgcgAAGAauuacCGCCGCGGGGGGc -3'
miRNA:   3'- uaGUGGUCCU------UUCU-----GCGGUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 3587 0.8 0.246607
Target:  5'- -aCGCCAGGAggcgcgAAGAauuacCGCCGCGGGGGGc -3'
miRNA:   3'- uaGUGGUCCU------UUCU-----GCGGUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 69148 0.74 0.496962
Target:  5'- gAUCgGCCAGGAGAGACGUgaGCucGGGGg -3'
miRNA:   3'- -UAG-UGGUCCUUUCUGCGg-UGcuCCCC- -5'
24336 5' -55.9 NC_005264.1 + 106980 0.74 0.503684
Target:  5'- cAUCGCCAGGAGccgcauAGACGCCugGAuauaugcgauuuuuGGGc -3'
miRNA:   3'- -UAGUGGUCCUU------UCUGCGGugCU--------------CCCc -5'
24336 5' -55.9 NC_005264.1 + 128959 0.74 0.506577
Target:  5'- -gCGCUAGGuucgaagcAGAGACGCCGgCGAGGGa -3'
miRNA:   3'- uaGUGGUCC--------UUUCUGCGGU-GCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 9933 0.74 0.506577
Target:  5'- -gCGCUAGGuucgaagcAGAGACGCCGgCGAGGGa -3'
miRNA:   3'- uaGUGGUCC--------UUUCUGCGGU-GCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 153351 0.73 0.575796
Target:  5'- uUCACgGGGGAggcggcagacaAGACGCgcgaagcguugCGCGAGGGGa -3'
miRNA:   3'- uAGUGgUCCUU-----------UCUGCG-----------GUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 19427 0.72 0.616349
Target:  5'- -gCGCCGGGu--GugGCCGCGGGGcgcGGg -3'
miRNA:   3'- uaGUGGUCCuuuCugCGGUGCUCC---CC- -5'
24336 5' -55.9 NC_005264.1 + 86633 0.72 0.636726
Target:  5'- uUCGCCAccucuucuGcGuuGGGCGCCGCGGGGGa -3'
miRNA:   3'- uAGUGGU--------C-CuuUCUGCGGUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 100868 0.72 0.646912
Target:  5'- --gACCAGGc---GCGCgACGAGGGGg -3'
miRNA:   3'- uagUGGUCCuuucUGCGgUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 98501 0.71 0.657087
Target:  5'- uAUCugCcGGA--GGCGCCgACGGGGGGc -3'
miRNA:   3'- -UAGugGuCCUuuCUGCGG-UGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 2879 0.71 0.68746
Target:  5'- gAUCgACCGGGGcgcGGCGCgGCGGGGaGGg -3'
miRNA:   3'- -UAG-UGGUCCUuu-CUGCGgUGCUCC-CC- -5'
24336 5' -55.9 NC_005264.1 + 121905 0.71 0.68746
Target:  5'- gAUCgACCGGGGcgcGGCGCgGCGGGGaGGg -3'
miRNA:   3'- -UAG-UGGUCCUuu-CUGCGgUGCUCC-CC- -5'
24336 5' -55.9 NC_005264.1 + 132762 0.71 0.68746
Target:  5'- uUCuguCCGGGcgcggcGGCGCCgACGAGGGGc -3'
miRNA:   3'- uAGu--GGUCCuuu---CUGCGG-UGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 74925 0.7 0.731197
Target:  5'- uUUACgGGGAGcgcguagaaguaucgGGACGCgACGAGGGu -3'
miRNA:   3'- uAGUGgUCCUU---------------UCUGCGgUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 154461 0.7 0.746733
Target:  5'- uUCACCAuGAcucGGACGCCagugGCGAGGaGGa -3'
miRNA:   3'- uAGUGGUcCUu--UCUGCGG----UGCUCC-CC- -5'
24336 5' -55.9 NC_005264.1 + 64504 0.69 0.764849
Target:  5'- aGUCGCCuGGAccGcgcuguucuguccGCGCCGCcgcgGAGGGGg -3'
miRNA:   3'- -UAGUGGuCCUuuC-------------UGCGGUG----CUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 144468 0.69 0.783461
Target:  5'- -gCGCgGGGAGAGACcgagacaGCUAUGGGGGa -3'
miRNA:   3'- uaGUGgUCCUUUCUG-------CGGUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 91303 0.69 0.785294
Target:  5'- uGUCACCAGGGcgaugcccguaccgGAGGCGCUGCGGuuggcugugaaggcuGGGu -3'
miRNA:   3'- -UAGUGGUCCU--------------UUCUGCGGUGCU---------------CCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.