miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24336 5' -55.9 NC_005264.1 + 152977 0.67 0.889119
Target:  5'- -gCGCCGGGAcc-GCGCC-CGAuaGGGGc -3'
miRNA:   3'- uaGUGGUCCUuucUGCGGuGCU--CCCC- -5'
24336 5' -55.9 NC_005264.1 + 54656 0.68 0.84472
Target:  5'- -aCGCCAGGGucG-CGCCGacuGGGGa -3'
miRNA:   3'- uaGUGGUCCUuuCuGCGGUgcuCCCC- -5'
24336 5' -55.9 NC_005264.1 + 5058 0.67 0.860351
Target:  5'- -cCGCCuagcuGGGAAGACGCCgauggaACGuGGGu -3'
miRNA:   3'- uaGUGGu----CCUUUCUGCGG------UGCuCCCc -5'
24336 5' -55.9 NC_005264.1 + 159705 0.67 0.874445
Target:  5'- -cCGCCAGGAcgauGAcGACgGCUACGAcuacgaaGGGGg -3'
miRNA:   3'- uaGUGGUCCU----UU-CUG-CGGUGCU-------CCCC- -5'
24336 5' -55.9 NC_005264.1 + 96537 0.67 0.882252
Target:  5'- -gCGCaaCAGGAGugcagGGACcCUACGGGGGGg -3'
miRNA:   3'- uaGUG--GUCCUU-----UCUGcGGUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 52673 0.67 0.882252
Target:  5'- --uGCCAGGAuAGGCcccaaaGCCGCGGcGGGu -3'
miRNA:   3'- uagUGGUCCUuUCUG------CGGUGCUcCCC- -5'
24336 5' -55.9 NC_005264.1 + 162461 0.67 0.882252
Target:  5'- -aCuCCAGGAcgcGAcCGCCAgaGAGGGGg -3'
miRNA:   3'- uaGuGGUCCUuu-CU-GCGGUg-CUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 124060 0.67 0.882252
Target:  5'- cGUCACCGGGAcgAGGcACGUacccuuCugGcAGGGGu -3'
miRNA:   3'- -UAGUGGUCCU--UUC-UGCG------GugC-UCCCC- -5'
24336 5' -55.9 NC_005264.1 + 35959 0.67 0.889119
Target:  5'- -gCGCCGacgauGGcGAuuCGCCugGAGGGGg -3'
miRNA:   3'- uaGUGGU-----CCuUUcuGCGGugCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 116684 0.68 0.84472
Target:  5'- -aCACCAcGAAcuuGAcuuCGCCACGAGGGu -3'
miRNA:   3'- uaGUGGUcCUUu--CU---GCGGUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 123523 0.68 0.836614
Target:  5'- gGUCGCgAGcGGAggggggacuGGGCGuCCGCGgAGGGGg -3'
miRNA:   3'- -UAGUGgUC-CUU---------UCUGC-GGUGC-UCCCC- -5'
24336 5' -55.9 NC_005264.1 + 116427 0.68 0.836614
Target:  5'- gGUCGCUGGGGgcGucugGCCGCGGGGGc -3'
miRNA:   3'- -UAGUGGUCCUuuCug--CGGUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 69148 0.74 0.496962
Target:  5'- gAUCgGCCAGGAGAGACGUgaGCucGGGGg -3'
miRNA:   3'- -UAG-UGGUCCUUUCUGCGg-UGcuCCCC- -5'
24336 5' -55.9 NC_005264.1 + 106980 0.74 0.503684
Target:  5'- cAUCGCCAGGAGccgcauAGACGCCugGAuauaugcgauuuuuGGGc -3'
miRNA:   3'- -UAGUGGUCCUU------UCUGCGGugCU--------------CCCc -5'
24336 5' -55.9 NC_005264.1 + 128959 0.74 0.506577
Target:  5'- -gCGCUAGGuucgaagcAGAGACGCCGgCGAGGGa -3'
miRNA:   3'- uaGUGGUCC--------UUUCUGCGGU-GCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 19427 0.72 0.616349
Target:  5'- -gCGCCGGGu--GugGCCGCGGGGcgcGGg -3'
miRNA:   3'- uaGUGGUCCuuuCugCGGUGCUCC---CC- -5'
24336 5' -55.9 NC_005264.1 + 121905 0.71 0.68746
Target:  5'- gAUCgACCGGGGcgcGGCGCgGCGGGGaGGg -3'
miRNA:   3'- -UAG-UGGUCCUuu-CUGCGgUGCUCC-CC- -5'
24336 5' -55.9 NC_005264.1 + 64504 0.69 0.764849
Target:  5'- aGUCGCCuGGAccGcgcuguucuguccGCGCCGCcgcgGAGGGGg -3'
miRNA:   3'- -UAGUGGuCCUuuC-------------UGCGGUG----CUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 144468 0.69 0.783461
Target:  5'- -gCGCgGGGAGAGACcgagacaGCUAUGGGGGa -3'
miRNA:   3'- uaGUGgUCCUUUCUG-------CGGUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 91303 0.69 0.785294
Target:  5'- uGUCACCAGGGcgaugcccguaccgGAGGCGCUGCGGuuggcugugaaggcuGGGu -3'
miRNA:   3'- -UAGUGGUCCU--------------UUCUGCGGUGCU---------------CCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.