miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24336 5' -55.9 NC_005264.1 + 121905 0.71 0.68746
Target:  5'- gAUCgACCGGGGcgcGGCGCgGCGGGGaGGg -3'
miRNA:   3'- -UAG-UGGUCCUuu-CUGCGgUGCUCC-CC- -5'
24336 5' -55.9 NC_005264.1 + 64504 0.69 0.764849
Target:  5'- aGUCGCCuGGAccGcgcuguucuguccGCGCCGCcgcgGAGGGGg -3'
miRNA:   3'- -UAGUGGuCCUuuC-------------UGCGGUG----CUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 144468 0.69 0.783461
Target:  5'- -gCGCgGGGAGAGACcgagacaGCUAUGGGGGa -3'
miRNA:   3'- uaGUGgUCCUUUCUG-------CGGUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 91303 0.69 0.785294
Target:  5'- uGUCACCAGGGcgaugcccguaccgGAGGCGCUGCGGuuggcugugaaggcuGGGu -3'
miRNA:   3'- -UAGUGGUCCU--------------UUCUGCGGUGCU---------------CCCc -5'
24336 5' -55.9 NC_005264.1 + 116427 0.68 0.836614
Target:  5'- gGUCGCUGGGGgcGucugGCCGCGGGGGc -3'
miRNA:   3'- -UAGUGGUCCUuuCug--CGGUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 123523 0.68 0.836614
Target:  5'- gGUCGCgAGcGGAggggggacuGGGCGuCCGCGgAGGGGg -3'
miRNA:   3'- -UAGUGgUC-CUU---------UCUGC-GGUGC-UCCCC- -5'
24336 5' -55.9 NC_005264.1 + 116684 0.68 0.84472
Target:  5'- -aCACCAcGAAcuuGAcuuCGCCACGAGGGu -3'
miRNA:   3'- uaGUGGUcCUUu--CU---GCGGUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 54656 0.68 0.84472
Target:  5'- -aCGCCAGGGucG-CGCCGacuGGGGa -3'
miRNA:   3'- uaGUGGUCCUuuCuGCGGUgcuCCCC- -5'
24336 5' -55.9 NC_005264.1 + 33950 0.67 0.889119
Target:  5'- -gCGCCGGGAcc-GCGCC-CGAuaGGGGc -3'
miRNA:   3'- uaGUGGUCCUuucUGCGGuGCU--CCCC- -5'
24336 5' -55.9 NC_005264.1 + 5033 0.67 0.882252
Target:  5'- cGUCACCGGGAcgAGGcACGUacccuuCugGcAGGGGu -3'
miRNA:   3'- -UAGUGGUCCU--UUC-UGCG------GugC-UCCCC- -5'
24336 5' -55.9 NC_005264.1 + 43434 0.67 0.882252
Target:  5'- -aCuCCAGGAcgcGAcCGCCAgaGAGGGGg -3'
miRNA:   3'- uaGuGGUCCUuu-CU-GCGGUg-CUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 87627 0.67 0.875165
Target:  5'- -cCGCgCAGGGccGAUgcaGCCGCGuGGGGc -3'
miRNA:   3'- uaGUG-GUCCUuuCUG---CGGUGCuCCCC- -5'
24336 5' -55.9 NC_005264.1 + 40679 0.67 0.874445
Target:  5'- -cCGCCAGGAcgauGAcGACgGCUACGAcuacgaaGGGGg -3'
miRNA:   3'- uaGUGGUCCU----UU-CUG-CGGUGCU-------CCCC- -5'
24336 5' -55.9 NC_005264.1 + 109511 0.67 0.895761
Target:  5'- --aGCCAGGu---ACGCCGuuacaucauuCGAGGGGg -3'
miRNA:   3'- uagUGGUCCuuucUGCGGU----------GCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 160657 0.67 0.895761
Target:  5'- -gCGCCGgcaauGGAGGGgcaACGCCGCGGGGa- -3'
miRNA:   3'- uaGUGGU-----CCUUUC---UGCGGUGCUCCcc -5'
24336 5' -55.9 NC_005264.1 + 66677 0.66 0.908358
Target:  5'- uUCAa-GGGAAcuaccGGCGCCggGCGGGGGGc -3'
miRNA:   3'- uAGUggUCCUUu----CUGCGG--UGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 9499 0.66 0.913724
Target:  5'- aGUCAgccagcgUCAGGcgcGGCGCCcuCGAGGGGc -3'
miRNA:   3'- -UAGU-------GGUCCuuuCUGCGGu-GCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 154077 0.66 0.919462
Target:  5'- -cCGCCGuagaggcucauauGGaAGAGGCGCUuaggaACGGGGGGc -3'
miRNA:   3'- uaGUGGU-------------CC-UUUCUGCGG-----UGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 1607 0.66 0.920022
Target:  5'- --gGCCAGGGAuacgGGACGCCG-GuGGGc -3'
miRNA:   3'- uagUGGUCCUU----UCUGCGGUgCuCCCc -5'
24336 5' -55.9 NC_005264.1 + 159283 1.09 0.003009
Target:  5'- gAUCACCAGGAAAGACGCCACGAGGGGg -3'
miRNA:   3'- -UAGUGGUCCUUUCUGCGGUGCUCCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.