miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24336 5' -55.9 NC_005264.1 + 54656 0.68 0.84472
Target:  5'- -aCGCCAGGGucG-CGCCGacuGGGGa -3'
miRNA:   3'- uaGUGGUCCUuuCuGCGGUgcuCCCC- -5'
24336 5' -55.9 NC_005264.1 + 58715 0.69 0.802423
Target:  5'- uUUACUAGGc-GGGCgGCCACcAGGGGg -3'
miRNA:   3'- uAGUGGUCCuuUCUG-CGGUGcUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 64504 0.69 0.764849
Target:  5'- aGUCGCCuGGAccGcgcuguucuguccGCGCCGCcgcgGAGGGGg -3'
miRNA:   3'- -UAGUGGuCCUuuC-------------UGCGGUG----CUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 66677 0.66 0.908358
Target:  5'- uUCAa-GGGAAcuaccGGCGCCggGCGGGGGGc -3'
miRNA:   3'- uAGUggUCCUUu----CUGCGG--UGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 69148 0.74 0.496962
Target:  5'- gAUCgGCCAGGAGAGACGUgaGCucGGGGg -3'
miRNA:   3'- -UAG-UGGUCCUUUCUGCGg-UGcuCCCC- -5'
24336 5' -55.9 NC_005264.1 + 74925 0.7 0.731197
Target:  5'- uUUACgGGGAGcgcguagaaguaucgGGACGCgACGAGGGu -3'
miRNA:   3'- uAGUGgUCCUU---------------UCUGCGgUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 79085 0.68 0.852634
Target:  5'- cUCACCGGcGAGGGCugucuGCCGCaGAGGGc -3'
miRNA:   3'- uAGUGGUCcUUUCUG-----CGGUG-CUCCCc -5'
24336 5' -55.9 NC_005264.1 + 86633 0.72 0.636726
Target:  5'- uUCGCCAccucuucuGcGuuGGGCGCCGCGGGGGa -3'
miRNA:   3'- uAGUGGU--------C-CuuUCUGCGGUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 87627 0.67 0.875165
Target:  5'- -cCGCgCAGGGccGAUgcaGCCGCGuGGGGc -3'
miRNA:   3'- uaGUG-GUCCUuuCUG---CGGUGCuCCCC- -5'
24336 5' -55.9 NC_005264.1 + 91303 0.69 0.785294
Target:  5'- uGUCACCAGGGcgaugcccguaccgGAGGCGCUGCGGuuggcugugaaggcuGGGu -3'
miRNA:   3'- -UAGUGGUCCU--------------UUCUGCGGUGCU---------------CCCc -5'
24336 5' -55.9 NC_005264.1 + 96537 0.67 0.882252
Target:  5'- -gCGCaaCAGGAGugcagGGACcCUACGGGGGGg -3'
miRNA:   3'- uaGUG--GUCCUU-----UCUGcGGUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 98501 0.71 0.657087
Target:  5'- uAUCugCcGGA--GGCGCCgACGGGGGGc -3'
miRNA:   3'- -UAGugGuCCUuuCUGCGG-UGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 100868 0.72 0.646912
Target:  5'- --gACCAGGc---GCGCgACGAGGGGg -3'
miRNA:   3'- uagUGGUCCuuucUGCGgUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 104840 0.68 0.84472
Target:  5'- -cCGCCGGGGccgcuGAGccacggcCGCCGCGcGGGGa -3'
miRNA:   3'- uaGUGGUCCU-----UUCu------GCGGUGCuCCCC- -5'
24336 5' -55.9 NC_005264.1 + 106980 0.74 0.503684
Target:  5'- cAUCGCCAGGAGccgcauAGACGCCugGAuauaugcgauuuuuGGGc -3'
miRNA:   3'- -UAGUGGUCCUU------UCUGCGGugCU--------------CCCc -5'
24336 5' -55.9 NC_005264.1 + 108137 0.68 0.851852
Target:  5'- -cCGCCGGGAucGGGGgGCCGuCGAgccucgcGGGGa -3'
miRNA:   3'- uaGUGGUCCU--UUCUgCGGU-GCU-------CCCC- -5'
24336 5' -55.9 NC_005264.1 + 109511 0.67 0.895761
Target:  5'- --aGCCAGGu---ACGCCGuuacaucauuCGAGGGGg -3'
miRNA:   3'- uagUGGUCCuuucUGCGGU----------GCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 116427 0.68 0.836614
Target:  5'- gGUCGCUGGGGgcGucugGCCGCGGGGGc -3'
miRNA:   3'- -UAGUGGUCCUuuCug--CGGUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 116684 0.68 0.84472
Target:  5'- -aCACCAcGAAcuuGAcuuCGCCACGAGGGu -3'
miRNA:   3'- uaGUGGUcCUUu--CU---GCGGUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 118151 0.68 0.828324
Target:  5'- gGUCACCAacaagauccuGGAAuacuGCgGCCACGGGGGa -3'
miRNA:   3'- -UAGUGGU----------CCUUuc--UG-CGGUGCUCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.