miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24336 5' -55.9 NC_005264.1 + 1607 0.66 0.920022
Target:  5'- --gGCCAGGGAuacgGGACGCCG-GuGGGc -3'
miRNA:   3'- uagUGGUCCUU----UCUGCGGUgCuCCCc -5'
24336 5' -55.9 NC_005264.1 + 2879 0.71 0.68746
Target:  5'- gAUCgACCGGGGcgcGGCGCgGCGGGGaGGg -3'
miRNA:   3'- -UAG-UGGUCCUuu-CUGCGgUGCUCC-CC- -5'
24336 5' -55.9 NC_005264.1 + 3587 0.8 0.246607
Target:  5'- -aCGCCAGGAggcgcgAAGAauuacCGCCGCGGGGGGc -3'
miRNA:   3'- uaGUGGUCCU------UUCU-----GCGGUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 4496 0.68 0.836614
Target:  5'- gGUCGCgAGcGGAggggggacuGGGCGuCCGCGgAGGGGg -3'
miRNA:   3'- -UAGUGgUC-CUU---------UCUGC-GGUGC-UCCCC- -5'
24336 5' -55.9 NC_005264.1 + 5033 0.67 0.882252
Target:  5'- cGUCACCGGGAcgAGGcACGUacccuuCugGcAGGGGu -3'
miRNA:   3'- -UAGUGGUCCU--UUC-UGCG------GugC-UCCCC- -5'
24336 5' -55.9 NC_005264.1 + 5058 0.67 0.860351
Target:  5'- -cCGCCuagcuGGGAAGACGCCgauggaACGuGGGu -3'
miRNA:   3'- uaGUGGu----CCUUUCUGCGG------UGCuCCCc -5'
24336 5' -55.9 NC_005264.1 + 9499 0.66 0.913724
Target:  5'- aGUCAgccagcgUCAGGcgcGGCGCCcuCGAGGGGc -3'
miRNA:   3'- -UAGU-------GGUCCuuuCUGCGGu-GCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 9933 0.74 0.506577
Target:  5'- -gCGCUAGGuucgaagcAGAGACGCCGgCGAGGGa -3'
miRNA:   3'- uaGUGGUCC--------UUUCUGCGGU-GCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 19427 0.72 0.616349
Target:  5'- -gCGCCGGGu--GugGCCGCGGGGcgcGGg -3'
miRNA:   3'- uaGUGGUCCuuuCugCGGUGCUCC---CC- -5'
24336 5' -55.9 NC_005264.1 + 33950 0.67 0.889119
Target:  5'- -gCGCCGGGAcc-GCGCC-CGAuaGGGGc -3'
miRNA:   3'- uaGUGGUCCUuucUGCGGuGCU--CCCC- -5'
24336 5' -55.9 NC_005264.1 + 35959 0.67 0.889119
Target:  5'- -gCGCCGacgauGGcGAuuCGCCugGAGGGGg -3'
miRNA:   3'- uaGUGGU-----CCuUUcuGCGGugCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 40679 0.67 0.874445
Target:  5'- -cCGCCAGGAcgauGAcGACgGCUACGAcuacgaaGGGGg -3'
miRNA:   3'- uaGUGGUCCU----UU-CUG-CGGUGCU-------CCCC- -5'
24336 5' -55.9 NC_005264.1 + 43434 0.67 0.882252
Target:  5'- -aCuCCAGGAcgcGAcCGCCAgaGAGGGGg -3'
miRNA:   3'- uaGuGGUCCUuu-CU-GCGGUg-CUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 45294 0.66 0.930741
Target:  5'- gAUUuCgAGGAaagacGAGACGCCAgGAuuaGGGGa -3'
miRNA:   3'- -UAGuGgUCCU-----UUCUGCGGUgCU---CCCC- -5'
24336 5' -55.9 NC_005264.1 + 46397 0.66 0.902175
Target:  5'- gGUCGUCAGGGccAGGucCGCCGCGAGGc- -3'
miRNA:   3'- -UAGUGGUCCU--UUCu-GCGGUGCUCCcc -5'
24336 5' -55.9 NC_005264.1 + 49603 0.66 0.9255
Target:  5'- --gACCAGGAcgacggGGGGCGCU-CGGuGGGGu -3'
miRNA:   3'- uagUGGUCCU------UUCUGCGGuGCU-CCCC- -5'
24336 5' -55.9 NC_005264.1 + 50384 0.66 0.930741
Target:  5'- -aCACaCGGGcAAGAUGaUgAUGAGGGGg -3'
miRNA:   3'- uaGUG-GUCCuUUCUGC-GgUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 52673 0.67 0.882252
Target:  5'- --uGCCAGGAuAGGCcccaaaGCCGCGGcGGGu -3'
miRNA:   3'- uagUGGUCCUuUCUG------CGGUGCUcCCC- -5'
24336 5' -55.9 NC_005264.1 + 53100 0.69 0.793473
Target:  5'- --aGCUgguGGAcAAGGCGCUcgGCGAGGGGg -3'
miRNA:   3'- uagUGGu--CCU-UUCUGCGG--UGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 53860 0.66 0.920022
Target:  5'- --gGCUAGGAGAGACGCguCGuaccccguguAGGGu -3'
miRNA:   3'- uagUGGUCCUUUCUGCGguGC----------UCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.