miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24336 5' -55.9 NC_005264.1 + 162461 0.67 0.882252
Target:  5'- -aCuCCAGGAcgcGAcCGCCAgaGAGGGGg -3'
miRNA:   3'- uaGuGGUCCUuu-CU-GCGGUg-CUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 160657 0.67 0.895761
Target:  5'- -gCGCCGgcaauGGAGGGgcaACGCCGCGGGGa- -3'
miRNA:   3'- uaGUGGU-----CCUUUC---UGCGGUGCUCCcc -5'
24336 5' -55.9 NC_005264.1 + 159705 0.67 0.874445
Target:  5'- -cCGCCAGGAcgauGAcGACgGCUACGAcuacgaaGGGGg -3'
miRNA:   3'- uaGUGGUCCU----UU-CUG-CGGUGCU-------CCCC- -5'
24336 5' -55.9 NC_005264.1 + 159283 1.09 0.003009
Target:  5'- gAUCACCAGGAAAGACGCCACGAGGGGg -3'
miRNA:   3'- -UAGUGGUCCUUUCUGCGGUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 154461 0.7 0.746733
Target:  5'- uUCACCAuGAcucGGACGCCagugGCGAGGaGGa -3'
miRNA:   3'- uAGUGGUcCUu--UCUGCGG----UGCUCC-CC- -5'
24336 5' -55.9 NC_005264.1 + 154077 0.66 0.919462
Target:  5'- -cCGCCGuagaggcucauauGGaAGAGGCGCUuaggaACGGGGGGc -3'
miRNA:   3'- uaGUGGU-------------CC-UUUCUGCGG-----UGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 153351 0.73 0.575796
Target:  5'- uUCACgGGGGAggcggcagacaAGACGCgcgaagcguugCGCGAGGGGa -3'
miRNA:   3'- uAGUGgUCCUU-----------UCUGCG-----------GUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 152977 0.67 0.889119
Target:  5'- -gCGCCGGGAcc-GCGCC-CGAuaGGGGc -3'
miRNA:   3'- uaGUGGUCCUuucUGCGGuGCU--CCCC- -5'
24336 5' -55.9 NC_005264.1 + 144468 0.69 0.783461
Target:  5'- -gCGCgGGGAGAGACcgagacaGCUAUGGGGGa -3'
miRNA:   3'- uaGUGgUCCUUUCUG-------CGGUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 138463 0.67 0.893792
Target:  5'- -cCGCCGGGGGAGccgcgaagccggucAUGCCagaGCGGcGGGGa -3'
miRNA:   3'- uaGUGGUCCUUUC--------------UGCGG---UGCU-CCCC- -5'
24336 5' -55.9 NC_005264.1 + 137824 0.68 0.819
Target:  5'- -gCGCCucAGGAGAGGCaugcagcgccugaGCCGC-AGGGGg -3'
miRNA:   3'- uaGUGG--UCCUUUCUG-------------CGGUGcUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 133162 0.68 0.84472
Target:  5'- cAUCACCGGGAcgaucGACgcggcaucugGCCACGGGGa- -3'
miRNA:   3'- -UAGUGGUCCUuu---CUG----------CGGUGCUCCcc -5'
24336 5' -55.9 NC_005264.1 + 132762 0.71 0.68746
Target:  5'- uUCuguCCGGGcgcggcGGCGCCgACGAGGGGc -3'
miRNA:   3'- uAGu--GGUCCuuu---CUGCGG-UGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 128959 0.74 0.506577
Target:  5'- -gCGCUAGGuucgaagcAGAGACGCCGgCGAGGGa -3'
miRNA:   3'- uaGUGGUCC--------UUUCUGCGGU-GCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 128526 0.66 0.913724
Target:  5'- aGUCAgccagcgUCAGGcgcGGCGCCcuCGAGGGGc -3'
miRNA:   3'- -UAGU-------GGUCCuuuCUGCGGu-GCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 124060 0.67 0.882252
Target:  5'- cGUCACCGGGAcgAGGcACGUacccuuCugGcAGGGGu -3'
miRNA:   3'- -UAGUGGUCCU--UUC-UGCG------GugC-UCCCC- -5'
24336 5' -55.9 NC_005264.1 + 123523 0.68 0.836614
Target:  5'- gGUCGCgAGcGGAggggggacuGGGCGuCCGCGgAGGGGg -3'
miRNA:   3'- -UAGUGgUC-CUU---------UCUGC-GGUGC-UCCCC- -5'
24336 5' -55.9 NC_005264.1 + 122614 0.8 0.246607
Target:  5'- -aCGCCAGGAggcgcgAAGAauuacCGCCGCGGGGGGc -3'
miRNA:   3'- uaGUGGUCCU------UUCU-----GCGGUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 121905 0.71 0.68746
Target:  5'- gAUCgACCGGGGcgcGGCGCgGCGGGGaGGg -3'
miRNA:   3'- -UAG-UGGUCCUuu-CUGCGgUGCUCC-CC- -5'
24336 5' -55.9 NC_005264.1 + 120634 0.66 0.920022
Target:  5'- --gGCCAGGGAuacgGGACGCCG-GuGGGc -3'
miRNA:   3'- uagUGGUCCUU----UCUGCGGUgCuCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.