Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24336 | 5' | -55.9 | NC_005264.1 | + | 35959 | 0.67 | 0.889119 |
Target: 5'- -gCGCCGacgauGGcGAuuCGCCugGAGGGGg -3' miRNA: 3'- uaGUGGU-----CCuUUcuGCGGugCUCCCC- -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 33950 | 0.67 | 0.889119 |
Target: 5'- -gCGCCGGGAcc-GCGCC-CGAuaGGGGc -3' miRNA: 3'- uaGUGGUCCUuucUGCGGuGCU--CCCC- -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 5058 | 0.67 | 0.860351 |
Target: 5'- -cCGCCuagcuGGGAAGACGCCgauggaACGuGGGu -3' miRNA: 3'- uaGUGGu----CCUUUCUGCGG------UGCuCCCc -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 159705 | 0.67 | 0.874445 |
Target: 5'- -cCGCCAGGAcgauGAcGACgGCUACGAcuacgaaGGGGg -3' miRNA: 3'- uaGUGGUCCU----UU-CUG-CGGUGCU-------CCCC- -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 52673 | 0.67 | 0.882252 |
Target: 5'- --uGCCAGGAuAGGCcccaaaGCCGCGGcGGGu -3' miRNA: 3'- uagUGGUCCUuUCUG------CGGUGCUcCCC- -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 162461 | 0.67 | 0.882252 |
Target: 5'- -aCuCCAGGAcgcGAcCGCCAgaGAGGGGg -3' miRNA: 3'- uaGuGGUCCUuu-CU-GCGGUg-CUCCCC- -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 124060 | 0.67 | 0.882252 |
Target: 5'- cGUCACCGGGAcgAGGcACGUacccuuCugGcAGGGGu -3' miRNA: 3'- -UAGUGGUCCU--UUC-UGCG------GugC-UCCCC- -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 133162 | 0.68 | 0.84472 |
Target: 5'- cAUCACCGGGAcgaucGACgcggcaucugGCCACGGGGa- -3' miRNA: 3'- -UAGUGGUCCUuu---CUG----------CGGUGCUCCcc -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 4496 | 0.68 | 0.836614 |
Target: 5'- gGUCGCgAGcGGAggggggacuGGGCGuCCGCGgAGGGGg -3' miRNA: 3'- -UAGUGgUC-CUU---------UCUGC-GGUGC-UCCCC- -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 104840 | 0.68 | 0.84472 |
Target: 5'- -cCGCCGGGGccgcuGAGccacggcCGCCGCGcGGGGa -3' miRNA: 3'- uaGUGGUCCU-----UUCu------GCGGUGCuCCCC- -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 137824 | 0.68 | 0.819 |
Target: 5'- -gCGCCucAGGAGAGGCaugcagcgccugaGCCGC-AGGGGg -3' miRNA: 3'- uaGUGG--UCCUUUCUG-------------CGGUGcUCCCC- -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 118151 | 0.68 | 0.828324 |
Target: 5'- gGUCACCAacaagauccuGGAAuacuGCgGCCACGGGGGa -3' miRNA: 3'- -UAGUGGU----------CCUUuc--UG-CGGUGCUCCCc -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 108137 | 0.68 | 0.851852 |
Target: 5'- -cCGCCGGGAucGGGGgGCCGuCGAgccucgcGGGGa -3' miRNA: 3'- uaGUGGUCCU--UUCUgCGGU-GCU-------CCCC- -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 79085 | 0.68 | 0.852634 |
Target: 5'- cUCACCGGcGAGGGCugucuGCCGCaGAGGGc -3' miRNA: 3'- uAGUGGUCcUUUCUG-----CGGUG-CUCCCc -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 116427 | 0.68 | 0.836614 |
Target: 5'- gGUCGCUGGGGgcGucugGCCGCGGGGGc -3' miRNA: 3'- -UAGUGGUCCUuuCug--CGGUGCUCCCc -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 123523 | 0.68 | 0.836614 |
Target: 5'- gGUCGCgAGcGGAggggggacuGGGCGuCCGCGgAGGGGg -3' miRNA: 3'- -UAGUGgUC-CUU---------UCUGC-GGUGC-UCCCC- -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 116684 | 0.68 | 0.84472 |
Target: 5'- -aCACCAcGAAcuuGAcuuCGCCACGAGGGu -3' miRNA: 3'- uaGUGGUcCUUu--CU---GCGGUGCUCCCc -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 54656 | 0.68 | 0.84472 |
Target: 5'- -aCGCCAGGGucG-CGCCGacuGGGGa -3' miRNA: 3'- uaGUGGUCCUuuCuGCGGUgcuCCCC- -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 64504 | 0.69 | 0.764849 |
Target: 5'- aGUCGCCuGGAccGcgcuguucuguccGCGCCGCcgcgGAGGGGg -3' miRNA: 3'- -UAGUGGuCCUuuC-------------UGCGGUG----CUCCCC- -5' |
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24336 | 5' | -55.9 | NC_005264.1 | + | 91303 | 0.69 | 0.785294 |
Target: 5'- uGUCACCAGGGcgaugcccguaccgGAGGCGCUGCGGuuggcugugaaggcuGGGu -3' miRNA: 3'- -UAGUGGUCCU--------------UUCUGCGGUGCU---------------CCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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