miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24336 5' -55.9 NC_005264.1 + 45294 0.66 0.930741
Target:  5'- gAUUuCgAGGAaagacGAGACGCCAgGAuuaGGGGa -3'
miRNA:   3'- -UAGuGgUCCU-----UUCUGCGGUgCU---CCCC- -5'
24336 5' -55.9 NC_005264.1 + 118151 0.68 0.828324
Target:  5'- gGUCACCAacaagauccuGGAAuacuGCgGCCACGGGGGa -3'
miRNA:   3'- -UAGUGGU----------CCUUuc--UG-CGGUGCUCCCc -5'
24336 5' -55.9 NC_005264.1 + 58715 0.69 0.802423
Target:  5'- uUUACUAGGc-GGGCgGCCACcAGGGGg -3'
miRNA:   3'- uAGUGGUCCuuUCUG-CGGUGcUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 159283 1.09 0.003009
Target:  5'- gAUCACCAGGAAAGACGCCACGAGGGGg -3'
miRNA:   3'- -UAGUGGUCCUUUCUGCGGUGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 66677 0.66 0.908358
Target:  5'- uUCAa-GGGAAcuaccGGCGCCggGCGGGGGGc -3'
miRNA:   3'- uAGUggUCCUUu----CUGCGG--UGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 160657 0.67 0.895761
Target:  5'- -gCGCCGgcaauGGAGGGgcaACGCCGCGGGGa- -3'
miRNA:   3'- uaGUGGU-----CCUUUC---UGCGGUGCUCCcc -5'
24336 5' -55.9 NC_005264.1 + 33950 0.67 0.889119
Target:  5'- -gCGCCGGGAcc-GCGCC-CGAuaGGGGc -3'
miRNA:   3'- uaGUGGUCCUuucUGCGGuGCU--CCCC- -5'
24336 5' -55.9 NC_005264.1 + 5033 0.67 0.882252
Target:  5'- cGUCACCGGGAcgAGGcACGUacccuuCugGcAGGGGu -3'
miRNA:   3'- -UAGUGGUCCU--UUC-UGCG------GugC-UCCCC- -5'
24336 5' -55.9 NC_005264.1 + 40679 0.67 0.874445
Target:  5'- -cCGCCAGGAcgauGAcGACgGCUACGAcuacgaaGGGGg -3'
miRNA:   3'- uaGUGGUCCU----UU-CUG-CGGUGCU-------CCCC- -5'
24336 5' -55.9 NC_005264.1 + 4496 0.68 0.836614
Target:  5'- gGUCGCgAGcGGAggggggacuGGGCGuCCGCGgAGGGGg -3'
miRNA:   3'- -UAGUGgUC-CUU---------UCUGC-GGUGC-UCCCC- -5'
24336 5' -55.9 NC_005264.1 + 108137 0.68 0.851852
Target:  5'- -cCGCCGGGAucGGGGgGCCGuCGAgccucgcGGGGa -3'
miRNA:   3'- uaGUGGUCCU--UUCUgCGGU-GCU-------CCCC- -5'
24336 5' -55.9 NC_005264.1 + 87627 0.67 0.875165
Target:  5'- -cCGCgCAGGGccGAUgcaGCCGCGuGGGGc -3'
miRNA:   3'- uaGUG-GUCCUuuCUG---CGGUGCuCCCC- -5'
24336 5' -55.9 NC_005264.1 + 1607 0.66 0.920022
Target:  5'- --gGCCAGGGAuacgGGACGCCG-GuGGGc -3'
miRNA:   3'- uagUGGUCCUU----UCUGCGGUgCuCCCc -5'
24336 5' -55.9 NC_005264.1 + 133162 0.68 0.84472
Target:  5'- cAUCACCGGGAcgaucGACgcggcaucugGCCACGGGGa- -3'
miRNA:   3'- -UAGUGGUCCUuu---CUG----------CGGUGCUCCcc -5'
24336 5' -55.9 NC_005264.1 + 154077 0.66 0.919462
Target:  5'- -cCGCCGuagaggcucauauGGaAGAGGCGCUuaggaACGGGGGGc -3'
miRNA:   3'- uaGUGGU-------------CC-UUUCUGCGG-----UGCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 43434 0.67 0.882252
Target:  5'- -aCuCCAGGAcgcGAcCGCCAgaGAGGGGg -3'
miRNA:   3'- uaGuGGUCCUuu-CU-GCGGUg-CUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 104840 0.68 0.84472
Target:  5'- -cCGCCGGGGccgcuGAGccacggcCGCCGCGcGGGGa -3'
miRNA:   3'- uaGUGGUCCU-----UUCu------GCGGUGCuCCCC- -5'
24336 5' -55.9 NC_005264.1 + 137824 0.68 0.819
Target:  5'- -gCGCCucAGGAGAGGCaugcagcgccugaGCCGC-AGGGGg -3'
miRNA:   3'- uaGUGG--UCCUUUCUG-------------CGGUGcUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 9499 0.66 0.913724
Target:  5'- aGUCAgccagcgUCAGGcgcGGCGCCcuCGAGGGGc -3'
miRNA:   3'- -UAGU-------GGUCCuuuCUGCGGu-GCUCCCC- -5'
24336 5' -55.9 NC_005264.1 + 109511 0.67 0.895761
Target:  5'- --aGCCAGGu---ACGCCGuuacaucauuCGAGGGGg -3'
miRNA:   3'- uagUGGUCCuuucUGCGGU----------GCUCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.