miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24338 5' -60.4 NC_005264.1 + 41422 0.67 0.679318
Target:  5'- -cAGgCCGGCGccGGGC-UCCUGCggGCg -3'
miRNA:   3'- caUCgGGUCGU--CCCGcAGGACGagCG- -5'
24338 5' -60.4 NC_005264.1 + 46983 0.73 0.348045
Target:  5'- cGUGGgCCaAGCAGGGaGUCCUGCUUc- -3'
miRNA:   3'- -CAUCgGG-UCGUCCCgCAGGACGAGcg -5'
24338 5' -60.4 NC_005264.1 + 123491 0.69 0.530798
Target:  5'- gGUGGCCgcgCGGUugcuGGGCGaUgUGCUCGCg -3'
miRNA:   3'- -CAUCGG---GUCGu---CCCGCaGgACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 98640 0.66 0.698063
Target:  5'- -aGGCCgAGUcggaaguGGGGU-UCCUGCUCGa -3'
miRNA:   3'- caUCGGgUCG-------UCCCGcAGGACGAGCg -5'
24338 5' -60.4 NC_005264.1 + 157599 1.11 0.000723
Target:  5'- cGUAGCCCAGCAGGGCGUCCUGCUCGCg -3'
miRNA:   3'- -CAUCGGGUCGUCCCGCAGGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 53079 0.66 0.699045
Target:  5'- -cGGaCCCAGCGGGaGUGUCUaaGCUgGUg -3'
miRNA:   3'- caUC-GGGUCGUCC-CGCAGGa-CGAgCG- -5'
24338 5' -60.4 NC_005264.1 + 100724 0.66 0.699045
Target:  5'- cGUGGCuCUGGagAGGGCGcuggUCgaGCUCGCc -3'
miRNA:   3'- -CAUCG-GGUCg-UCCCGC----AGgaCGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 90583 0.69 0.521187
Target:  5'- aUAGCgCGGCAGGucGCGcCUUGCcCGCg -3'
miRNA:   3'- cAUCGgGUCGUCC--CGCaGGACGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 2684 0.66 0.708832
Target:  5'- -gGGUCC-GCAagcGGGC-UCUUGCUUGCa -3'
miRNA:   3'- caUCGGGuCGU---CCCGcAGGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 1008 0.66 0.699045
Target:  5'- --cGCCCguguggugggggGGCAGGGgcCGUUCUGUauucUCGCg -3'
miRNA:   3'- cauCGGG------------UCGUCCC--GCAGGACG----AGCG- -5'
24338 5' -60.4 NC_005264.1 + 18414 0.68 0.609522
Target:  5'- -cGGCCgGcGCAGGcGCGcCCU-CUCGCu -3'
miRNA:   3'- caUCGGgU-CGUCC-CGCaGGAcGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 24940 0.68 0.589616
Target:  5'- --cGCCCGGCu--GCgGUCCUGUUCGUu -3'
miRNA:   3'- cauCGGGUCGuccCG-CAGGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 11060 0.68 0.589616
Target:  5'- -gGGCCUGGCGGGGCaaGUaCCcGcCUCGUa -3'
miRNA:   3'- caUCGGGUCGUCCCG--CA-GGaC-GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 48788 0.68 0.579704
Target:  5'- -aAGgCCGGCGGGGCGaaCgacCUCGCg -3'
miRNA:   3'- caUCgGGUCGUCCCGCagGac-GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 152887 0.7 0.502176
Target:  5'- -gGGUCCGGCAGucccucgccGGCGUCuCUGCUucgaaccuagCGCg -3'
miRNA:   3'- caUCGGGUCGUC---------CCGCAG-GACGA----------GCG- -5'
24338 5' -60.4 NC_005264.1 + 133513 0.67 0.669394
Target:  5'- cGUAGCCgCAGgAGGcgcuGUGUCCaUGCauggCGCa -3'
miRNA:   3'- -CAUCGG-GUCgUCC----CGCAGG-ACGa---GCG- -5'
24338 5' -60.4 NC_005264.1 + 53252 0.67 0.669394
Target:  5'- --uGCCCcGCGGGcGCGUgUCUgGCUUGCu -3'
miRNA:   3'- cauCGGGuCGUCC-CGCA-GGA-CGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 114971 0.67 0.679318
Target:  5'- -cAGCCUAGCgcgaacuugAGGcGCGUgCCggcGCUUGCa -3'
miRNA:   3'- caUCGGGUCG---------UCC-CGCA-GGa--CGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 160449 0.67 0.679318
Target:  5'- -cAGgCCGGCGccGGGC-UCCUGCggGCg -3'
miRNA:   3'- caUCgGGUCGU--CCCGcAGGACGagCG- -5'
24338 5' -60.4 NC_005264.1 + 132938 0.66 0.689204
Target:  5'- -aGGCUggCAGUAGGGCGUUUcGC-CGCc -3'
miRNA:   3'- caUCGG--GUCGUCCCGCAGGaCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.