Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24338 | 5' | -60.4 | NC_005264.1 | + | 149576 | 0.66 | 0.728213 |
Target: 5'- -cAGCCCcgGGCGGaGGgGggCUGCUCGa -3' miRNA: 3'- caUCGGG--UCGUC-CCgCagGACGAGCg -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 115257 | 0.68 | 0.589616 |
Target: 5'- aUGGCCU-GCGGGGaguGUCCUGCaguauuguagCGCg -3' miRNA: 3'- cAUCGGGuCGUCCCg--CAGGACGa---------GCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 123491 | 0.69 | 0.530798 |
Target: 5'- gGUGGCCgcgCGGUugcuGGGCGaUgUGCUCGCg -3' miRNA: 3'- -CAUCGG---GUCGu---CCCGCaGgACGAGCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 157599 | 1.11 | 0.000723 |
Target: 5'- cGUAGCCCAGCAGGGCGUCCUGCUCGCg -3' miRNA: 3'- -CAUCGGGUCGUCCCGCAGGACGAGCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 87125 | 0.66 | 0.718558 |
Target: 5'- cGgcGCCC-GCGGGGCGcaCCaGUcuUCGCg -3' miRNA: 3'- -CauCGGGuCGUCCCGCa-GGaCG--AGCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 41706 | 0.66 | 0.718558 |
Target: 5'- --uGCUC-GUAGGG-GUCCaUGCUUGCa -3' miRNA: 3'- cauCGGGuCGUCCCgCAGG-ACGAGCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 53079 | 0.66 | 0.699045 |
Target: 5'- -cGGaCCCAGCGGGaGUGUCUaaGCUgGUg -3' miRNA: 3'- caUC-GGGUCGUCC-CGCAGGa-CGAgCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 98640 | 0.66 | 0.698063 |
Target: 5'- -aGGCCgAGUcggaaguGGGGU-UCCUGCUCGa -3' miRNA: 3'- caUCGGgUCG-------UCCCGcAGGACGAGCg -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 42251 | 0.67 | 0.659442 |
Target: 5'- cGUAGUCCGGcCGGGGCccgCCUauuGCcggCGCg -3' miRNA: 3'- -CAUCGGGUC-GUCCCGca-GGA---CGa--GCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 37598 | 0.68 | 0.609522 |
Target: 5'- -cGGCCgCGGCGGGGgGUCaaaGgaCGCg -3' miRNA: 3'- caUCGG-GUCGUCCCgCAGga-CgaGCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 91063 | 0.67 | 0.649469 |
Target: 5'- uUGGCCCAcGCucucuaGGCGUCCguucuucaGCUUGCc -3' miRNA: 3'- cAUCGGGU-CGuc----CCGCAGGa-------CGAGCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 112992 | 0.67 | 0.659442 |
Target: 5'- --cGCCagaaGGCuGcGGCGUaCgUGCUCGCg -3' miRNA: 3'- cauCGGg---UCGuC-CCGCA-GgACGAGCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 45392 | 0.66 | 0.728213 |
Target: 5'- -aGGCgCGGCaaacgauggAGGGCGgcgcCCUGCgCGCc -3' miRNA: 3'- caUCGgGUCG---------UCCCGCa---GGACGaGCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 12458 | 0.67 | 0.629492 |
Target: 5'- -aGGCCCGGCA-GGCGUCagcgaguuCUUGCg -3' miRNA: 3'- caUCGGGUCGUcCCGCAGgac-----GAGCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 155685 | 0.66 | 0.728213 |
Target: 5'- gGUGaCUCGGCAGGGCGUagccucaggCUGCccuucuUCGCg -3' miRNA: 3'- -CAUcGGGUCGUCCCGCAg--------GACG------AGCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 41422 | 0.67 | 0.679318 |
Target: 5'- -cAGgCCGGCGccGGGC-UCCUGCggGCg -3' miRNA: 3'- caUCgGGUCGU--CCCGcAGGACGagCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 5819 | 0.68 | 0.619502 |
Target: 5'- aUAGUCCGGCGGcGGUGgCCgccaCUCGCc -3' miRNA: 3'- cAUCGGGUCGUC-CCGCaGGac--GAGCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 87742 | 0.69 | 0.559993 |
Target: 5'- -cAGCUCGGCGccGGCG-CCUGC-CGCa -3' miRNA: 3'- caUCGGGUCGUc-CCGCaGGACGaGCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 109959 | 0.66 | 0.727251 |
Target: 5'- -cGGCCCugcugauGGCAGGuaccGCGagCCUGCcCGCu -3' miRNA: 3'- caUCGGG-------UCGUCC----CGCa-GGACGaGCG- -5' |
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24338 | 5' | -60.4 | NC_005264.1 | + | 100724 | 0.66 | 0.699045 |
Target: 5'- cGUGGCuCUGGagAGGGCGcuggUCgaGCUCGCc -3' miRNA: 3'- -CAUCG-GGUCg-UCCCGC----AGgaCGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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