miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24341 5' -57.6 NC_005264.1 + 58366 0.67 0.741574
Target:  5'- cUGGCgGgGCCGGCGCgauaUGCGcCGGAUu -3'
miRNA:   3'- cAUCGgUaCGGCCGCG----ACGC-GCUUAu -5'
24341 5' -57.6 NC_005264.1 + 155781 0.68 0.721825
Target:  5'- cGgcGCCG-GCCGGCGCcgucgccgcuUGCGCgcaGAAUAc -3'
miRNA:   3'- -CauCGGUaCGGCCGCG----------ACGCG---CUUAU- -5'
24341 5' -57.6 NC_005264.1 + 52971 0.68 0.721825
Target:  5'- -cGGCgGUGCUgcgaacucaGGCGgUGCGCGAGc- -3'
miRNA:   3'- caUCGgUACGG---------CCGCgACGCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 36755 0.68 0.721825
Target:  5'- cGgcGCCG-GCCGGCGCcgucgccgcuUGCGCgcaGAAUAc -3'
miRNA:   3'- -CauCGGUaCGGCCGCG----------ACGCG---CUUAU- -5'
24341 5' -57.6 NC_005264.1 + 36692 0.68 0.721825
Target:  5'- -cGGCuCAgucgGCCGGCGCUaacgGCGCGu--- -3'
miRNA:   3'- caUCG-GUa---CGGCCGCGA----CGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 48482 0.68 0.721825
Target:  5'- aGUAGCC---CCGcGCGUUGCGCGGc-- -3'
miRNA:   3'- -CAUCGGuacGGC-CGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 25222 0.68 0.721825
Target:  5'- gGUGGCCAgggcagUGCCGGCagaGUUGagGCGAGUu -3'
miRNA:   3'- -CAUCGGU------ACGGCCG---CGACg-CGCUUAu -5'
24341 5' -57.6 NC_005264.1 + 24956 0.68 0.721825
Target:  5'- --uGCCGUaCCagGGCGCUGCGcCGAAUc -3'
miRNA:   3'- cauCGGUAcGG--CCGCGACGC-GCUUAu -5'
24341 5' -57.6 NC_005264.1 + 155718 0.68 0.721825
Target:  5'- -cGGCuCAgucgGCCGGCGCUaacgGCGCGu--- -3'
miRNA:   3'- caUCG-GUa---CGGCCGCGA----CGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 100027 0.68 0.71183
Target:  5'- -aGGCCGcGgCGGCGCUGCuGCGu--- -3'
miRNA:   3'- caUCGGUaCgGCCGCGACG-CGCuuau -5'
24341 5' -57.6 NC_005264.1 + 161388 0.68 0.71183
Target:  5'- --cGCCGgcgaugGCCGGUGCUGgcuccCGCGGAg- -3'
miRNA:   3'- cauCGGUa-----CGGCCGCGAC-----GCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 89793 0.68 0.71183
Target:  5'- cUGGCCGcauaccGCCGGCGCUuuccGCGCuAGUGa -3'
miRNA:   3'- cAUCGGUa-----CGGCCGCGA----CGCGcUUAU- -5'
24341 5' -57.6 NC_005264.1 + 42361 0.68 0.71183
Target:  5'- --cGCCGgcgaugGCCGGUGCUGgcuccCGCGGAg- -3'
miRNA:   3'- cauCGGUa-----CGGCCGCGAC-----GCGCUUau -5'
24341 5' -57.6 NC_005264.1 + 98035 0.68 0.701765
Target:  5'- -gAGCCcugcgcuuccgGUGCCcaugggGGCGCUGCGCGc--- -3'
miRNA:   3'- caUCGG-----------UACGG------CCGCGACGCGCuuau -5'
24341 5' -57.6 NC_005264.1 + 19953 0.68 0.701765
Target:  5'- --cGCCGUGauggagaaaGGCGCgGCGCGAGUc -3'
miRNA:   3'- cauCGGUACgg-------CCGCGaCGCGCUUAu -5'
24341 5' -57.6 NC_005264.1 + 113390 0.68 0.691642
Target:  5'- -gGGUUAUGCaGGCgaGCUGCGCGAc-- -3'
miRNA:   3'- caUCGGUACGgCCG--CGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 102777 0.68 0.691642
Target:  5'- -gGGCCAguucggugGCCuGUGUUGCGCGAu-- -3'
miRNA:   3'- caUCGGUa-------CGGcCGCGACGCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 66611 0.69 0.671254
Target:  5'- --cGCCGcguUGCCGGCGCcGuCGCGGc-- -3'
miRNA:   3'- cauCGGU---ACGGCCGCGaC-GCGCUuau -5'
24341 5' -57.6 NC_005264.1 + 62564 0.69 0.671254
Target:  5'- -aAGCCGaGCC--CGCUGCGCGGAUc -3'
miRNA:   3'- caUCGGUaCGGccGCGACGCGCUUAu -5'
24341 5' -57.6 NC_005264.1 + 93290 0.69 0.671254
Target:  5'- aGUGGaggaAUGCCucaaGGCGCUGUGCGcAAUAa -3'
miRNA:   3'- -CAUCgg--UACGG----CCGCGACGCGC-UUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.