miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24342 3' -52.6 NC_005264.1 + 109055 0.66 0.98194
Target:  5'- -gAUCCCUGaccuggaacagcAGCCcaGCGaUugUGGCGa -3'
miRNA:   3'- gaUAGGGAU------------UCGGuaUGC-GugACCGC- -5'
24342 3' -52.6 NC_005264.1 + 95555 0.66 0.98194
Target:  5'- ---aCCCUucgAAGCCG-ACGCGCUaGCGc -3'
miRNA:   3'- gauaGGGA---UUCGGUaUGCGUGAcCGC- -5'
24342 3' -52.6 NC_005264.1 + 154597 0.66 0.98194
Target:  5'- ----gCCgcuGGCCAgacuaacCGCGCUGGCGu -3'
miRNA:   3'- gauagGGau-UCGGUau-----GCGUGACCGC- -5'
24342 3' -52.6 NC_005264.1 + 102990 0.66 0.979327
Target:  5'- ---aCCgUGgcGGCCugcaccacguauUGCGCGCUGGCGu -3'
miRNA:   3'- gauaGGgAU--UCGGu-----------AUGCGUGACCGC- -5'
24342 3' -52.6 NC_005264.1 + 39211 0.66 0.977436
Target:  5'- ----gCCUAcGCCGccGCgGCGCUGGCGg -3'
miRNA:   3'- gauagGGAUuCGGUa-UG-CGUGACCGC- -5'
24342 3' -52.6 NC_005264.1 + 158238 0.66 0.977436
Target:  5'- ----gCCUAcGCCGccGCgGCGCUGGCGg -3'
miRNA:   3'- gauagGGAUuCGGUa-UG-CGUGACCGC- -5'
24342 3' -52.6 NC_005264.1 + 89125 0.66 0.977436
Target:  5'- ---aCCCgcgcaAGGCCGUcgGUACUGGCGc -3'
miRNA:   3'- gauaGGGa----UUCGGUAugCGUGACCGC- -5'
24342 3' -52.6 NC_005264.1 + 7719 0.66 0.974897
Target:  5'- --cUCCCUAacgcugcgcauGGCCAUAUGCAggguuaacaugcUUGGCc -3'
miRNA:   3'- gauAGGGAU-----------UCGGUAUGCGU------------GACCGc -5'
24342 3' -52.6 NC_005264.1 + 137354 0.66 0.974897
Target:  5'- -cAUCCU--AGCCucguucccGUACGC-CUGGCGc -3'
miRNA:   3'- gaUAGGGauUCGG--------UAUGCGuGACCGC- -5'
24342 3' -52.6 NC_005264.1 + 145843 0.66 0.974897
Target:  5'- -cGUCCCUGAGUCuguUugG-ACcGGCGg -3'
miRNA:   3'- gaUAGGGAUUCGGu--AugCgUGaCCGC- -5'
24342 3' -52.6 NC_005264.1 + 115264 0.67 0.95903
Target:  5'- -cGUCCCcgcGAGCCAUAUcugGCACgaGGCc -3'
miRNA:   3'- gaUAGGGa--UUCGGUAUG---CGUGa-CCGc -5'
24342 3' -52.6 NC_005264.1 + 138624 0.67 0.95903
Target:  5'- aCUAUCCCg-------GCGCGCUGGCu -3'
miRNA:   3'- -GAUAGGGauucgguaUGCGUGACCGc -5'
24342 3' -52.6 NC_005264.1 + 100781 0.68 0.948516
Target:  5'- ---gCCC-AAGCCAUGCGCGCccaaaucucuuacgaUGGUa -3'
miRNA:   3'- gauaGGGaUUCGGUAUGCGUG---------------ACCGc -5'
24342 3' -52.6 NC_005264.1 + 155113 0.68 0.946754
Target:  5'- ---aCCCUGcauauGGCCAUGCGCAgCguuagggaGGCGa -3'
miRNA:   3'- gauaGGGAU-----UCGGUAUGCGU-Ga-------CCGC- -5'
24342 3' -52.6 NC_005264.1 + 128444 0.68 0.941704
Target:  5'- --uUCCCUGAGCUcgAgcCGCGCccgucuuUGGCGu -3'
miRNA:   3'- gauAGGGAUUCGGuaU--GCGUG-------ACCGC- -5'
24342 3' -52.6 NC_005264.1 + 39420 0.68 0.932272
Target:  5'- uUAUCUCgu-GCCAgacUACuaGCUGGCGg -3'
miRNA:   3'- gAUAGGGauuCGGU---AUGcgUGACCGC- -5'
24342 3' -52.6 NC_005264.1 + 83242 0.69 0.915534
Target:  5'- ----gUCUAGGCCGccgcugAUGCGCUGGCGc -3'
miRNA:   3'- gauagGGAUUCGGUa-----UGCGUGACCGC- -5'
24342 3' -52.6 NC_005264.1 + 89265 0.7 0.882679
Target:  5'- -gGUCUUUAGGCCGUACuuaaauGCAgUGGUGa -3'
miRNA:   3'- gaUAGGGAUUCGGUAUG------CGUgACCGC- -5'
24342 3' -52.6 NC_005264.1 + 65714 0.7 0.882679
Target:  5'- cCUGUagCCCUugagcucagAGGCCAacuCGCGCUGGCc -3'
miRNA:   3'- -GAUA--GGGA---------UUCGGUau-GCGUGACCGc -5'
24342 3' -52.6 NC_005264.1 + 133698 0.71 0.852177
Target:  5'- -gGUCCUU--GCCGccGCGCACUGGUGc -3'
miRNA:   3'- gaUAGGGAuuCGGUa-UGCGUGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.