miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 3' -52.3 NC_005264.1 + 5943 0.67 0.962648
Target:  5'- --uCGGAaccCCUCgcgcaGGGCAGCGGCGc-- -3'
miRNA:   3'- guuGCCU---GGAGa----UCCGUCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 39080 0.66 0.979781
Target:  5'- --cCGGACgccggCUCggcGGGCAGCGGCGucuGGa -3'
miRNA:   3'- guuGCCUG-----GAGa--UCCGUCGCUGUu--UC- -5'
24343 3' -52.3 NC_005264.1 + 31141 0.75 0.650094
Target:  5'- gCGACGGACCcgugcgguUCUAGGUuucguGUGACGGGGg -3'
miRNA:   3'- -GUUGCCUGG--------AGAUCCGu----CGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 2499 0.69 0.910073
Target:  5'- uCGGCGGGCCUCgcgcgacuucagcgcGGGgGGCGACuucccGAGa -3'
miRNA:   3'- -GUUGCCUGGAGa--------------UCCgUCGCUGu----UUC- -5'
24343 3' -52.3 NC_005264.1 + 13624 0.68 0.95903
Target:  5'- -cGCGGGCag--GGGCGGCGguaACGAAGg -3'
miRNA:   3'- guUGCCUGgagaUCCGUCGC---UGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 48394 0.66 0.98194
Target:  5'- ---gGGGCgUC-GGGCGGCGGCcAGGa -3'
miRNA:   3'- guugCCUGgAGaUCCGUCGCUGuUUC- -5'
24343 3' -52.3 NC_005264.1 + 3675 0.69 0.915534
Target:  5'- gGGCGG-CCgUCUcGGCGGCGAgaCGAGGa -3'
miRNA:   3'- gUUGCCuGG-AGAuCCGUCGCU--GUUUC- -5'
24343 3' -52.3 NC_005264.1 + 96258 0.66 0.98194
Target:  5'- cCAGCGaGAgCCUgUaccagcAGGUGGCGGCGGAGc -3'
miRNA:   3'- -GUUGC-CU-GGAgA------UCCGUCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 150690 0.66 0.98194
Target:  5'- aGACGaGACCcagCaacGGGCAGCGccgGCGGAGg -3'
miRNA:   3'- gUUGC-CUGGa--Ga--UCCGUCGC---UGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 105028 0.67 0.969205
Target:  5'- ---aGGACCUCgucGGGaCuGCGGCGAAa -3'
miRNA:   3'- guugCCUGGAGa--UCC-GuCGCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 7486 0.68 0.954379
Target:  5'- -uGCGGccuccuuucguuCCUCUAcGGCAGCGAUAGc- -3'
miRNA:   3'- guUGCCu-----------GGAGAU-CCGUCGCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 154874 1.09 0.006338
Target:  5'- gCAACGGACCUCUAGGCAGCGACAAAGa -3'
miRNA:   3'- -GUUGCCUGGAGAUCCGUCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 141467 0.69 0.932272
Target:  5'- gCGGCGGgGCCUCUuuccaccggccgAGGCGGCccggGACGAAc -3'
miRNA:   3'- -GUUGCC-UGGAGA------------UCCGUCG----CUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 56437 0.69 0.908831
Target:  5'- -cGCGGugCUUgccgacgUAGGCGGCGuACAGAc -3'
miRNA:   3'- guUGCCugGAG-------AUCCGUCGC-UGUUUc -5'
24343 3' -52.3 NC_005264.1 + 71607 0.72 0.791048
Target:  5'- --uUGGAagcCCUCaccggcgAGGCGGCGGCAGAGa -3'
miRNA:   3'- guuGCCU---GGAGa------UCCGUCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 98519 0.76 0.587235
Target:  5'- aCGGgGGGCCUCagucuuGGCAGCGGCAAc- -3'
miRNA:   3'- -GUUgCCUGGAGau----CCGUCGCUGUUuc -5'
24343 3' -52.3 NC_005264.1 + 161998 0.67 0.962648
Target:  5'- aGGCGGAUCgugGGGCAcGCcagaGACAGAGg -3'
miRNA:   3'- gUUGCCUGGagaUCCGU-CG----CUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 16870 0.66 0.979781
Target:  5'- ----uGACCUUgucGGCGGCGGCAAAc -3'
miRNA:   3'- guugcCUGGAGau-CCGUCGCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 41014 0.67 0.974897
Target:  5'- --gUGGGCUcCcAGGCAGCGGuCGAGGg -3'
miRNA:   3'- guuGCCUGGaGaUCCGUCGCU-GUUUC- -5'
24343 3' -52.3 NC_005264.1 + 160041 0.67 0.974897
Target:  5'- --gUGGGCUcCcAGGCAGCGGuCGAGGg -3'
miRNA:   3'- guuGCCUGGaGaUCCGUCGCU-GUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.