miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 3' -52.3 NC_005264.1 + 81884 0.66 0.985732
Target:  5'- uCGAUGGcGCCUU--GGCGGCGAUggGc -3'
miRNA:   3'- -GUUGCC-UGGAGauCCGUCGCUGuuUc -5'
24343 3' -52.3 NC_005264.1 + 5943 0.67 0.962648
Target:  5'- --uCGGAaccCCUCgcgcaGGGCAGCGGCGc-- -3'
miRNA:   3'- guuGCCU---GGAGa----UCCGUCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 13624 0.68 0.95903
Target:  5'- -cGCGGGCag--GGGCGGCGguaACGAAGg -3'
miRNA:   3'- guUGCCUGgagaUCCGUCGC---UGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 154874 1.09 0.006338
Target:  5'- gCAACGGACCUCUAGGCAGCGACAAAGa -3'
miRNA:   3'- -GUUGCCUGGAGAUCCGUCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 96258 0.66 0.98194
Target:  5'- cCAGCGaGAgCCUgUaccagcAGGUGGCGGCGGAGc -3'
miRNA:   3'- -GUUGC-CU-GGAgA------UCCGUCGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 48394 0.66 0.98194
Target:  5'- ---gGGGCgUC-GGGCGGCGGCcAGGa -3'
miRNA:   3'- guugCCUGgAGaUCCGUCGCUGuUUC- -5'
24343 3' -52.3 NC_005264.1 + 16870 0.66 0.979781
Target:  5'- ----uGACCUUgucGGCGGCGGCAAAc -3'
miRNA:   3'- guugcCUGGAGau-CCGUCGCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 30835 0.66 0.979555
Target:  5'- gAACGGGCUcgcgucgUCgucGGCGGCGGCGc-- -3'
miRNA:   3'- gUUGCCUGG-------AGau-CCGUCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 37573 0.66 0.977436
Target:  5'- gCGACGGAggcggcaagUCUCgcGGCGgccGCGGCGGGGg -3'
miRNA:   3'- -GUUGCCU---------GGAGauCCGU---CGCUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 38372 0.67 0.962648
Target:  5'- ---aGGACCUCcuccggcgAGaGCGGCGACGccGAGa -3'
miRNA:   3'- guugCCUGGAGa-------UC-CGUCGCUGU--UUC- -5'
24343 3' -52.3 NC_005264.1 + 105028 0.67 0.969205
Target:  5'- ---aGGACCUCgucGGGaCuGCGGCGAAa -3'
miRNA:   3'- guugCCUGGAGa--UCC-GuCGCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 41014 0.67 0.974897
Target:  5'- --gUGGGCUcCcAGGCAGCGGuCGAGGg -3'
miRNA:   3'- guuGCCUGGaGaUCCGUCGCU-GUUUC- -5'
24343 3' -52.3 NC_005264.1 + 153507 0.66 0.983921
Target:  5'- aCGGCGGccGCCcCU-GGCGGgGACGAAc -3'
miRNA:   3'- -GUUGCC--UGGaGAuCCGUCgCUGUUUc -5'
24343 3' -52.3 NC_005264.1 + 161998 0.67 0.962648
Target:  5'- aGGCGGAUCgugGGGCAcGCcagaGACAGAGg -3'
miRNA:   3'- gUUGCCUGGagaUCCGU-CG----CUGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 110851 0.66 0.983921
Target:  5'- cCGACGGuCCUCUcGGCgaagaucgAGCGugAGc- -3'
miRNA:   3'- -GUUGCCuGGAGAuCCG--------UCGCugUUuc -5'
24343 3' -52.3 NC_005264.1 + 158751 0.66 0.978397
Target:  5'- -cAUGGAUCuUCUGGGCGacauggggccucccuGCGACAuAGa -3'
miRNA:   3'- guUGCCUGG-AGAUCCGU---------------CGCUGUuUC- -5'
24343 3' -52.3 NC_005264.1 + 155447 0.67 0.962648
Target:  5'- aCGACGGcGCCg--GGGCcGCGAuCGAAGa -3'
miRNA:   3'- -GUUGCC-UGGagaUCCGuCGCU-GUUUC- -5'
24343 3' -52.3 NC_005264.1 + 79301 0.67 0.962648
Target:  5'- -uGCGGACCgucGGGC-GCGACAu-- -3'
miRNA:   3'- guUGCCUGGagaUCCGuCGCUGUuuc -5'
24343 3' -52.3 NC_005264.1 + 150690 0.66 0.98194
Target:  5'- aGACGaGACCcagCaacGGGCAGCGccgGCGGAGg -3'
miRNA:   3'- gUUGC-CUGGa--Ga--UCCGUCGC---UGUUUC- -5'
24343 3' -52.3 NC_005264.1 + 39080 0.66 0.979781
Target:  5'- --cCGGACgccggCUCggcGGGCAGCGGCGucuGGa -3'
miRNA:   3'- guuGCCUG-----GAGa--UCCGUCGCUGUu--UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.