miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 86154 0.68 0.703279
Target:  5'- aCgGUGGGCGACaGCcUGGugGC-CGUg -3'
miRNA:   3'- cGgCACCUGCUG-CGcACCugCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 156268 0.68 0.703279
Target:  5'- gGCCccUGGGgGGCGCaucaccGUGGACGagGCGCu -3'
miRNA:   3'- -CGGc-ACCUgCUGCG------CACCUGCg-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 30610 0.68 0.722277
Target:  5'- cCCG-GcGACGGCgGCGgcgacGGAucCGCGCGCa -3'
miRNA:   3'- cGGCaC-CUGCUG-CGCa----CCU--GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 87040 0.68 0.722277
Target:  5'- cGCCuacGGACGGCGaCGaccUGGAgGCgaGCGCg -3'
miRNA:   3'- -CGGca-CCUGCUGC-GC---ACCUgCG--CGCG- -5'
24343 5' -59.7 NC_005264.1 + 149637 0.68 0.722277
Target:  5'- cCCG-GcGACGGCgGCGgcgacGGAucCGCGCGCa -3'
miRNA:   3'- cGGCaC-CUGCUG-CGCa----CCU--GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 84320 0.68 0.727925
Target:  5'- aCCG-GGcACGGCGCGaUGGuuacuggccucacCGCGUGCa -3'
miRNA:   3'- cGGCaCC-UGCUGCGC-ACCu------------GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 157050 0.68 0.731675
Target:  5'- cGCCGUGGGCGccuCG-GUGGugcacgacgguCGCGUGg -3'
miRNA:   3'- -CGGCACCUGCu--GCgCACCu----------GCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 38023 0.68 0.731675
Target:  5'- cGCCGUGGGCGccuCG-GUGGugcacgacgguCGCGUGg -3'
miRNA:   3'- -CGGCACCUGCu--GCgCACCu----------GCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 131977 0.68 0.731675
Target:  5'- cGCCGUugccuaccGGGCGGCGCGccgccgccGACGaCGaCGCg -3'
miRNA:   3'- -CGGCA--------CCUGCUGCGCac------CUGC-GC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 93823 0.68 0.731675
Target:  5'- cGCCGUGGcacaguACGAUgGCGacagGGcCGCGgGCc -3'
miRNA:   3'- -CGGCACC------UGCUG-CGCa---CCuGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 53567 0.67 0.740995
Target:  5'- aGCuCGcGGuACGACGCGcccGACGCGUGg -3'
miRNA:   3'- -CG-GCaCC-UGCUGCGCac-CUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 94414 0.67 0.740995
Target:  5'- cGgCGcGGACugcgcgaucgcuGACGUG-GGAUGCGCGUa -3'
miRNA:   3'- -CgGCaCCUG------------CUGCGCaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 66848 0.67 0.740995
Target:  5'- cGCCGUcGccCGACGCGaaauaGAuCGCGCGCg -3'
miRNA:   3'- -CGGCA-CcuGCUGCGCac---CU-GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 138324 0.67 0.740995
Target:  5'- aGuuGUGGucAUGGCGCGUGcGCGacaagGCGCc -3'
miRNA:   3'- -CggCACC--UGCUGCGCACcUGCg----CGCG- -5'
24343 5' -59.7 NC_005264.1 + 87429 0.67 0.740995
Target:  5'- cGCCGUacacugcccGCGGcCGCGcagacGGugGCGCGCa -3'
miRNA:   3'- -CGGCAcc-------UGCU-GCGCa----CCugCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 13599 0.67 0.750228
Target:  5'- -aCGggaccGGCGAuCGCGgucgGGACGCGgGCa -3'
miRNA:   3'- cgGCac---CUGCU-GCGCa---CCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 132626 0.67 0.750228
Target:  5'- -aCGggaccGGCGAuCGCGgucgGGACGCGgGCa -3'
miRNA:   3'- cgGCac---CUGCU-GCGCa---CCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 53355 0.67 0.750228
Target:  5'- aGCCuaaGGACGGCGUGgcaagcGuGAUGCGCGa -3'
miRNA:   3'- -CGGca-CCUGCUGCGCa-----C-CUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 91290 0.67 0.753895
Target:  5'- cGCCGUucaacucugucaccaGGGCGAUGCccGUaccGGAgGCGCuGCg -3'
miRNA:   3'- -CGGCA---------------CCUGCUGCG--CA---CCUgCGCG-CG- -5'
24343 5' -59.7 NC_005264.1 + 59991 0.67 0.759367
Target:  5'- gGCCGcgagcGaGACGGcCGCGUGGcCGCG-GCc -3'
miRNA:   3'- -CGGCa----C-CUGCU-GCGCACCuGCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.