miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24345 3' -57.7 NC_005264.1 + 56695 0.66 0.823092
Target:  5'- gUUCgguaaggCUC--GCCGCGCGAcaaGCUGCCAu -3'
miRNA:   3'- aAAGa------GGGuuCGGCGUGCU---CGACGGU- -5'
24345 3' -57.7 NC_005264.1 + 60137 0.66 0.814426
Target:  5'- --gCUCUCcAGCUGgACGAGCaGCCu -3'
miRNA:   3'- aaaGAGGGuUCGGCgUGCUCGaCGGu -5'
24345 3' -57.7 NC_005264.1 + 94889 0.66 0.805592
Target:  5'- -cUUUCUCGAGCCGCA--GGC-GCCGg -3'
miRNA:   3'- aaAGAGGGUUCGGCGUgcUCGaCGGU- -5'
24345 3' -57.7 NC_005264.1 + 62910 0.66 0.805592
Target:  5'- -gUC-CaCCAgcuuAGCCGCGCGGGCUugcgcgGCCGc -3'
miRNA:   3'- aaAGaG-GGU----UCGGCGUGCUCGA------CGGU- -5'
24345 3' -57.7 NC_005264.1 + 109499 0.66 0.805592
Target:  5'- -gUC-CUUAGGCUGguUGGGCUGCCc -3'
miRNA:   3'- aaAGaGGGUUCGGCguGCUCGACGGu -5'
24345 3' -57.7 NC_005264.1 + 115190 0.66 0.802911
Target:  5'- aUUCUCaCUccgcgacauccgcgAAGCCGCACGAGUauacuuuuaUGUCAu -3'
miRNA:   3'- aAAGAG-GG--------------UUCGGCGUGCUCG---------ACGGU- -5'
24345 3' -57.7 NC_005264.1 + 70989 0.66 0.796599
Target:  5'- -gUCgCCC-GGUCGCAgGGGCUGCg- -3'
miRNA:   3'- aaAGaGGGuUCGGCGUgCUCGACGgu -5'
24345 3' -57.7 NC_005264.1 + 66597 0.66 0.796599
Target:  5'- -cUCUCgCUggGCUGCGcCGcGUUGCCGg -3'
miRNA:   3'- aaAGAG-GGuuCGGCGU-GCuCGACGGU- -5'
24345 3' -57.7 NC_005264.1 + 12235 0.66 0.787456
Target:  5'- -aUCUCCCAAGCgGUcuugugauuACGGGCcGUCc -3'
miRNA:   3'- aaAGAGGGUUCGgCG---------UGCUCGaCGGu -5'
24345 3' -57.7 NC_005264.1 + 60236 0.67 0.772536
Target:  5'- -aUUUCCCAgAGCgCGCcauguaugcggucacGCGAGCUGCg- -3'
miRNA:   3'- aaAGAGGGU-UCG-GCG---------------UGCUCGACGgu -5'
24345 3' -57.7 NC_005264.1 + 141982 0.67 0.768754
Target:  5'- cUUUCUCCUuuuAGUCGCGC-AGC-GCCGu -3'
miRNA:   3'- -AAAGAGGGu--UCGGCGUGcUCGaCGGU- -5'
24345 3' -57.7 NC_005264.1 + 11922 0.67 0.7398
Target:  5'- aUUUUCCCAcggucGCCGCugGGGUgaaaguccacuUGCCu -3'
miRNA:   3'- aAAGAGGGUu----CGGCGugCUCG-----------ACGGu -5'
24345 3' -57.7 NC_005264.1 + 130948 0.67 0.7398
Target:  5'- aUUUUCCCAcggucGCCGCugGGGUgaaaguccacuUGCCu -3'
miRNA:   3'- aAAGAGGGUu----CGGCGugCUCG-----------ACGGu -5'
24345 3' -57.7 NC_005264.1 + 123093 0.67 0.729946
Target:  5'- -aUCUCCCGAcagcggggcuGuuGCACGGGCgGCg- -3'
miRNA:   3'- aaAGAGGGUU----------CggCGUGCUCGaCGgu -5'
24345 3' -57.7 NC_005264.1 + 4066 0.67 0.729946
Target:  5'- -aUCUCCCGAcagcggggcuGuuGCACGGGCgGCg- -3'
miRNA:   3'- aaAGAGGGUU----------CggCGUGCUCGaCGgu -5'
24345 3' -57.7 NC_005264.1 + 53194 0.68 0.720006
Target:  5'- -gUCUCCgGGGCCGC--GAGUUGCa- -3'
miRNA:   3'- aaAGAGGgUUCGGCGugCUCGACGgu -5'
24345 3' -57.7 NC_005264.1 + 106604 0.68 0.70999
Target:  5'- --cCUCgaCAaaAGCCGCGCGAcGCUcGCCAg -3'
miRNA:   3'- aaaGAGg-GU--UCGGCGUGCU-CGA-CGGU- -5'
24345 3' -57.7 NC_005264.1 + 111835 0.68 0.679577
Target:  5'- gUUCUCCgCGAGuaucuuCCGCACc-GCUGCCGg -3'
miRNA:   3'- aAAGAGG-GUUC------GGCGUGcuCGACGGU- -5'
24345 3' -57.7 NC_005264.1 + 159905 0.68 0.669348
Target:  5'- gUUUCUCa-AAGCaCGCugGAGCUcgcaGCCAa -3'
miRNA:   3'- -AAAGAGggUUCG-GCGugCUCGA----CGGU- -5'
24345 3' -57.7 NC_005264.1 + 26149 0.69 0.647778
Target:  5'- -aUgUCCCAGGCCGCGgCGAGgacuuucgcggcaCUGUCGg -3'
miRNA:   3'- aaAgAGGGUUCGGCGU-GCUC-------------GACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.