miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24345 5' -54.5 NC_005264.1 + 131998 0.69 0.851593
Target:  5'- uGGCGGUggGCCGAC-CGGC--GC-CAGa -3'
miRNA:   3'- -CCGCCAa-UGGCUGuGCCGaaCGuGUU- -5'
24345 5' -54.5 NC_005264.1 + 87242 0.74 0.589933
Target:  5'- aGGCauGGagGCCGACuACGGCU-GCGCAAa -3'
miRNA:   3'- -CCG--CCaaUGGCUG-UGCCGAaCGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 141468 0.66 0.934698
Target:  5'- cGGCGGggccucuuuccaccgGCCGAgGCGGCccgGgACGAa -3'
miRNA:   3'- -CCGCCaa-------------UGGCUgUGCCGaa-CgUGUU- -5'
24345 5' -54.5 NC_005264.1 + 73372 0.68 0.895571
Target:  5'- cGCGGUgcuuUUGGCGCGGCUcUGC-CAAg -3'
miRNA:   3'- cCGCCAau--GGCUGUGCCGA-ACGuGUU- -5'
24345 5' -54.5 NC_005264.1 + 146417 0.7 0.772457
Target:  5'- gGGCGGgUGCUGAuggcucgaugcCGCGGCUcugacuUGCGCAc -3'
miRNA:   3'- -CCGCCaAUGGCU-----------GUGCCGA------ACGUGUu -5'
24345 5' -54.5 NC_005264.1 + 69782 0.71 0.723585
Target:  5'- gGGCGGagGCCG-CAUGGCa-GCGCAGc -3'
miRNA:   3'- -CCGCCaaUGGCuGUGCCGaaCGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 158872 0.72 0.682977
Target:  5'- uGGCGGUaaagccgGCCGGCGCGGCcaGgACGu -3'
miRNA:   3'- -CCGCCAa------UGGCUGUGCCGaaCgUGUu -5'
24345 5' -54.5 NC_005264.1 + 60899 0.66 0.949947
Target:  5'- cGCGGUgggGCCGACGCcgccaGUUUcGCGCGc -3'
miRNA:   3'- cCGCCAa--UGGCUGUGc----CGAA-CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 24058 0.66 0.949947
Target:  5'- uGGCGGacacaGCCaacaGCACGGCcagGCGCAu -3'
miRNA:   3'- -CCGCCaa---UGGc---UGUGCCGaa-CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 67003 0.66 0.945604
Target:  5'- cGGCGaGUgcUGCCugGACggagcgGCGGCcUUGCGCAGg -3'
miRNA:   3'- -CCGC-CA--AUGG--CUG------UGCCG-AACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 87513 0.68 0.881806
Target:  5'- cGCuGUUACCGGCACuGGC--GCGCGg -3'
miRNA:   3'- cCGcCAAUGGCUGUG-CCGaaCGUGUu -5'
24345 5' -54.5 NC_005264.1 + 155781 0.69 0.851593
Target:  5'- cGGCGccgGCCGGCGCcgucgccGCUUGCGCGc -3'
miRNA:   3'- -CCGCcaaUGGCUGUGc------CGAACGUGUu -5'
24345 5' -54.5 NC_005264.1 + 114200 0.69 0.851593
Target:  5'- aGCGGaauacccaACCGACGcCGGCUUGCcCAc -3'
miRNA:   3'- cCGCCaa------UGGCUGU-GCCGAACGuGUu -5'
24345 5' -54.5 NC_005264.1 + 73819 0.69 0.843513
Target:  5'- aGGCGaGUgccCCGACAUGcGCgagcUGCGCGAu -3'
miRNA:   3'- -CCGC-CAau-GGCUGUGC-CGa---ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 76141 0.67 0.920247
Target:  5'- cGGCGGcaaagACCGcGCGCGGCgaGUaACGAa -3'
miRNA:   3'- -CCGCCaa---UGGC-UGUGCCGaaCG-UGUU- -5'
24345 5' -54.5 NC_005264.1 + 118669 0.66 0.931123
Target:  5'- aGGuCGGUUACaagguuaGAUACGcGCUcGCGCGg -3'
miRNA:   3'- -CC-GCCAAUGg------CUGUGC-CGAaCGUGUu -5'
24345 5' -54.5 NC_005264.1 + 64285 0.66 0.931123
Target:  5'- cGCGGgUGCCGAguauCGCGGCccacaGCGCGu -3'
miRNA:   3'- cCGCCaAUGGCU----GUGCCGaa---CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 61590 0.66 0.936194
Target:  5'- uGGaacaGcUUGCCGGcCACGGUcUGCACAAa -3'
miRNA:   3'- -CCg---CcAAUGGCU-GUGCCGaACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 53572 0.66 0.936194
Target:  5'- cGCGcagAgCGGCGCGGCUUGCGu-- -3'
miRNA:   3'- cCGCcaaUgGCUGUGCCGAACGUguu -5'
24345 5' -54.5 NC_005264.1 + 33078 0.66 0.945604
Target:  5'- cGCGGUgcCCGGgGCGGauuucgUGCAUAu -3'
miRNA:   3'- cCGCCAauGGCUgUGCCga----ACGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.