miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24347 3' -51.6 NC_005264.1 + 39225 0.66 0.989092
Target:  5'- gGCGCuGGCGggGAGGGCcugcguUCCcGGCu -3'
miRNA:   3'- -CGCGuUCGCgaUUCUCGau----AGGaCUG- -5'
24347 3' -51.6 NC_005264.1 + 67630 0.73 0.768221
Target:  5'- aCGCGGGCGC--AGGGgUGUCCUGcGCg -3'
miRNA:   3'- cGCGUUCGCGauUCUCgAUAGGAC-UG- -5'
24347 3' -51.6 NC_005264.1 + 101685 0.79 0.445332
Target:  5'- uGCGCGAGCGCgaagcaaacgaucAGGAGCUGUCCagGAa -3'
miRNA:   3'- -CGCGUUCGCGa------------UUCUCGAUAGGa-CUg -5'
24347 3' -51.6 NC_005264.1 + 146311 1.12 0.004105
Target:  5'- cGCGCAAGCGCUAAGAGCUAUCCUGACu -3'
miRNA:   3'- -CGCGUUCGCGAUUCUCGAUAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 52882 0.66 0.982128
Target:  5'- cGCGCGAGCGa--GGGGCUG-CgUGGu -3'
miRNA:   3'- -CGCGUUCGCgauUCUCGAUaGgACUg -5'
24347 3' -51.6 NC_005264.1 + 29097 0.66 0.982128
Target:  5'- uGCGUAuaggcucccAGCGCcgcAAGGGCUGUCgUGcCa -3'
miRNA:   3'- -CGCGU---------UCGCGa--UUCUCGAUAGgACuG- -5'
24347 3' -51.6 NC_005264.1 + 132105 0.67 0.979954
Target:  5'- aGCgGCucuuuGCGCgggAAGAGCc-UCCUGAUg -3'
miRNA:   3'- -CG-CGuu---CGCGa--UUCUCGauAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 116290 0.67 0.97759
Target:  5'- gGCGCGGGCgGCUAc-GGCUGUggCCUucGACg -3'
miRNA:   3'- -CGCGUUCG-CGAUucUCGAUA--GGA--CUG- -5'
24347 3' -51.6 NC_005264.1 + 2510 0.67 0.972255
Target:  5'- cGCGCGacuucAGCGCgGGGGGCgacuUCCcgaGACg -3'
miRNA:   3'- -CGCGU-----UCGCGaUUCUCGau--AGGa--CUG- -5'
24347 3' -51.6 NC_005264.1 + 35004 0.71 0.849953
Target:  5'- cCGCGagcGGCGCUcgaagAGGAGCgcuggccGUCCUGGCc -3'
miRNA:   3'- cGCGU---UCGCGA-----UUCUCGa------UAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 93616 0.68 0.950878
Target:  5'- gGCGCAgcuGGcCGCU--GAGCUGUCCUc-- -3'
miRNA:   3'- -CGCGU---UC-GCGAuuCUCGAUAGGAcug -5'
24347 3' -51.6 NC_005264.1 + 64863 0.67 0.977343
Target:  5'- uGCGCGGGCGCaguuuacUAGGAuGUUGUUuuguUUGACg -3'
miRNA:   3'- -CGCGUUCGCG-------AUUCU-CGAUAG----GACUG- -5'
24347 3' -51.6 NC_005264.1 + 125286 0.66 0.984119
Target:  5'- cGCgGCGGcGCGCUGuc-GCUucgCCUGACg -3'
miRNA:   3'- -CG-CGUU-CGCGAUucuCGAua-GGACUG- -5'
24347 3' -51.6 NC_005264.1 + 156546 0.7 0.914649
Target:  5'- cGCGCAAGUGCagcuggGAGAGCUcggcgcuaacauGUCCaccgaGACc -3'
miRNA:   3'- -CGCGUUCGCGa-----UUCUCGA------------UAGGa----CUG- -5'
24347 3' -51.6 NC_005264.1 + 61120 0.66 0.984119
Target:  5'- aGUGUucGUGCUGAu-GCUGUCCUaccGGCa -3'
miRNA:   3'- -CGCGuuCGCGAUUcuCGAUAGGA---CUG- -5'
24347 3' -51.6 NC_005264.1 + 38246 0.67 0.97759
Target:  5'- aGC-CAGGCGCUGuccgcGGuGCUGUCggUGACg -3'
miRNA:   3'- -CGcGUUCGCGAU-----UCuCGAUAGg-ACUG- -5'
24347 3' -51.6 NC_005264.1 + 110663 0.7 0.888311
Target:  5'- -aGCAcauuuaucaggAGCGCcGAGAGCUA-CCUGAa -3'
miRNA:   3'- cgCGU-----------UCGCGaUUCUCGAUaGGACUg -5'
24347 3' -51.6 NC_005264.1 + 32346 0.74 0.707413
Target:  5'- aGUGCuucgggGGGUGCUucGGGGCUGUUCUGGCg -3'
miRNA:   3'- -CGCG------UUCGCGAu-UCUCGAUAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 110163 0.66 0.982128
Target:  5'- cCGCc-GCgGCUuuGGGGcCUAUCCUGGCa -3'
miRNA:   3'- cGCGuuCG-CGAu-UCUC-GAUAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 95735 0.67 0.979954
Target:  5'- aGCGCGGGCGCU-GGAGacggCCaUGGg -3'
miRNA:   3'- -CGCGUUCGCGAuUCUCgauaGG-ACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.