Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24348 | 3' | -56.5 | NC_005264.1 | + | 89547 | 0.66 | 0.866408 |
Target: 5'- cGCGGGCAG---UGucCGGCGAGCUUu -3' miRNA: 3'- aUGCCCGUUaggACcuGCUGCUCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 22769 | 0.68 | 0.791296 |
Target: 5'- gGCGGGCAAUgagGGgcGCGGCGAcacuGCUCa -3' miRNA: 3'- aUGCCCGUUAggaCC--UGCUGCU----CGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 15144 | 0.68 | 0.800326 |
Target: 5'- cACGGGCAAUCgCguuGCGGCGAuGCUg -3' miRNA: 3'- aUGCCCGUUAG-GaccUGCUGCU-CGAg -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 100201 | 0.68 | 0.800326 |
Target: 5'- cGCGuGCugcgCUUGGACGGCGGGCg- -3' miRNA: 3'- aUGCcCGuua-GGACCUGCUGCUCGag -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 54417 | 0.67 | 0.83484 |
Target: 5'- uUGCGcGGCGcgCCgacuaGGGCGugGGGUUg -3' miRNA: 3'- -AUGC-CCGUuaGGa----CCUGCugCUCGAg -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 49596 | 0.67 | 0.843027 |
Target: 5'- cGCcGGCGA-CCaGGACGACGGggggcGCUCg -3' miRNA: 3'- aUGcCCGUUaGGaCCUGCUGCU-----CGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 132270 | 0.67 | 0.850231 |
Target: 5'- aGCaGGUggUCCUcuaccgacucggaGGACGACGAggGUUCg -3' miRNA: 3'- aUGcCCGuuAGGA-------------CCUGCUGCU--CGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 122357 | 0.67 | 0.851021 |
Target: 5'- gACGGGCAAUaCUGGccuUGGCGAgggucuuucGCUCc -3' miRNA: 3'- aUGCCCGUUAgGACCu--GCUGCU---------CGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 41591 | 0.67 | 0.858817 |
Target: 5'- gACGuGGC-GUCUaaacaUGGGCccgcuGACGAGCUCg -3' miRNA: 3'- aUGC-CCGuUAGG-----ACCUG-----CUGCUCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 45274 | 0.68 | 0.782122 |
Target: 5'- -uCGGGCuGUCCcuugucgaacgUGGACGGCaccuGGCUCa -3' miRNA: 3'- auGCCCGuUAGG-----------ACCUGCUGc---UCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 148674 | 0.68 | 0.782122 |
Target: 5'- -cCGaGGCGAgaaauagCCUGGuuGGCGAGCUg -3' miRNA: 3'- auGC-CCGUUa------GGACCugCUGCUCGAg -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 66201 | 0.68 | 0.779343 |
Target: 5'- gGCGGGCGGUgcgCCUccgcggccagcgaaGGACuuGGCGAGCUg -3' miRNA: 3'- aUGCCCGUUA---GGA--------------CCUG--CUGCUCGAg -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 157361 | 0.7 | 0.664141 |
Target: 5'- gGCGGGCccuggccguGAUgCUGGGCGGCgGGGCg- -3' miRNA: 3'- aUGCCCG---------UUAgGACCUGCUG-CUCGag -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 15223 | 0.7 | 0.674328 |
Target: 5'- gACGcGGCGAUCCUGcGcucuaaguucaACG-CGGGCUCg -3' miRNA: 3'- aUGC-CCGUUAGGAC-C-----------UGCuGCUCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 12256 | 0.69 | 0.714642 |
Target: 5'- uUACGGGCcGUcCCUGaGAUGACGAuGC-Cg -3' miRNA: 3'- -AUGCCCGuUA-GGAC-CUGCUGCU-CGaG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 47017 | 0.69 | 0.724568 |
Target: 5'- cGCGGuCAGUCCUGG--GGCGAGCg- -3' miRNA: 3'- aUGCCcGUUAGGACCugCUGCUCGag -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 127809 | 0.69 | 0.724568 |
Target: 5'- gGCGGGCGucggCCaGGACGGCcAGCg- -3' miRNA: 3'- aUGCCCGUua--GGaCCUGCUGcUCGag -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 158090 | 0.69 | 0.74417 |
Target: 5'- cGCGcGGCGGUCCacccccGGACGcCG-GCUCg -3' miRNA: 3'- aUGC-CCGUUAGGa-----CCUGCuGCuCGAG- -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 124728 | 0.69 | 0.753828 |
Target: 5'- cGCGGGCAAcgCCUGG-CGGCGGa--- -3' miRNA: 3'- aUGCCCGUUa-GGACCuGCUGCUcgag -5' |
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24348 | 3' | -56.5 | NC_005264.1 | + | 43398 | 0.68 | 0.772814 |
Target: 5'- -gUGGGCGG-CCUGGGCaGCGAGaUCg -3' miRNA: 3'- auGCCCGUUaGGACCUGcUGCUCgAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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