miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 3' -56.5 NC_005264.1 + 108977 0.66 0.901095
Target:  5'- cACGGGguAcgacgcgucucUCCuagccuUGaACGACGAGCUCa -3'
miRNA:   3'- aUGCCCguU-----------AGG------ACcUGCUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 38334 0.7 0.664141
Target:  5'- gGCGGGCccuggccguGAUgCUGGGCGGCgGGGCg- -3'
miRNA:   3'- aUGCCCG---------UUAgGACCUGCUG-CUCGag -5'
24348 3' -56.5 NC_005264.1 + 9748 0.73 0.522362
Target:  5'- cUGCGGGCuuccuucuucucGGUUCUGGuuugugGCGACGAGUUCc -3'
miRNA:   3'- -AUGCCCG------------UUAGGACC------UGCUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 145662 1.07 0.003149
Target:  5'- gUACGGGCAAUCCUGGACGACGAGCUCu -3'
miRNA:   3'- -AUGCCCGUUAGGACCUGCUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 66497 0.66 0.880951
Target:  5'- gGCGGGCugcgc-GGcgcgcuCGACGAGCUCg -3'
miRNA:   3'- aUGCCCGuuaggaCCu-----GCUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 80756 0.66 0.865659
Target:  5'- --gGGGaCAAUCCUcGGCGGCGAagaucuuguccgcGCUCu -3'
miRNA:   3'- augCCC-GUUAGGAcCUGCUGCU-------------CGAG- -5'
24348 3' -56.5 NC_005264.1 + 3330 0.67 0.851021
Target:  5'- gACGGGCAAUaCUGGccuUGGCGAgggucuuucGCUCc -3'
miRNA:   3'- aUGCCCGUUAgGACCu--GCUGCU---------CGAG- -5'
24348 3' -56.5 NC_005264.1 + 13243 0.67 0.850231
Target:  5'- aGCaGGUggUCCUcuaccgacucggaGGACGACGAggGUUCg -3'
miRNA:   3'- aUGcCCGuuAGGA-------------CCUGCUGCU--CGAG- -5'
24348 3' -56.5 NC_005264.1 + 151886 0.69 0.757662
Target:  5'- cGCGGGCAucagCUguauguggcggaggGGACGGCG-GCUCc -3'
miRNA:   3'- aUGCCCGUua--GGa-------------CCUGCUGCuCGAG- -5'
24348 3' -56.5 NC_005264.1 + 26276 0.7 0.674328
Target:  5'- cGCGGcGCGuUCCUGGAUcGCGAucgGCUCc -3'
miRNA:   3'- aUGCC-CGUuAGGACCUGcUGCU---CGAG- -5'
24348 3' -56.5 NC_005264.1 + 39063 0.69 0.74417
Target:  5'- cGCGcGGCGGUCCacccccGGACGcCG-GCUCg -3'
miRNA:   3'- aUGC-CCGUUAGGa-----CCUGCuGCuCGAG- -5'
24348 3' -56.5 NC_005264.1 + 71539 0.67 0.817921
Target:  5'- gUACGGGCAucgcCCUGG-UGACaGAGUUg -3'
miRNA:   3'- -AUGCCCGUua--GGACCuGCUG-CUCGAg -5'
24348 3' -56.5 NC_005264.1 + 44992 0.66 0.901095
Target:  5'- --aGGGCGAgCCUGGcgagaacgGCGACGAGa-- -3'
miRNA:   3'- augCCCGUUaGGACC--------UGCUGCUCgag -5'
24348 3' -56.5 NC_005264.1 + 8783 0.69 0.724568
Target:  5'- gGCGGGCGucggCCaGGACGGCcAGCg- -3'
miRNA:   3'- aUGCCCGUua--GGaCCUGCUGcUCGag -5'
24348 3' -56.5 NC_005264.1 + 1615 0.66 0.887893
Target:  5'- aUACGGGacg-CC-GGugGGCGcGGCUCc -3'
miRNA:   3'- -AUGCCCguuaGGaCCugCUGC-UCGAG- -5'
24348 3' -56.5 NC_005264.1 + 76345 0.67 0.83484
Target:  5'- cAUGGGCG---CUGGAgGGCGAGCc- -3'
miRNA:   3'- aUGCCCGUuagGACCUgCUGCUCGag -5'
24348 3' -56.5 NC_005264.1 + 128887 0.69 0.714642
Target:  5'- uUGCGGcaccGCucGUCCUcgacGACGGCGGGCUCa -3'
miRNA:   3'- -AUGCC----CGu-UAGGAc---CUGCUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 100535 0.71 0.633459
Target:  5'- gGCGGGUcuAGUCC-GGACGAC--GCUCg -3'
miRNA:   3'- aUGCCCG--UUAGGaCCUGCUGcuCGAG- -5'
24348 3' -56.5 NC_005264.1 + 119117 0.66 0.880951
Target:  5'- gGCGGGCucugCUgggGGAgGGCGAGgaCg -3'
miRNA:   3'- aUGCCCGuua-GGa--CCUgCUGCUCgaG- -5'
24348 3' -56.5 NC_005264.1 + 19025 0.67 0.858817
Target:  5'- aGCGGGCGuga-UGGACGGCaGGCg- -3'
miRNA:   3'- aUGCCCGUuaggACCUGCUGcUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.